KCC002458A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002458A_C01 KCC002458A_c01
cccacttgcttacccagaagggccccgaacgccgcagacaCTGACACTATCTTGAACATA
TTTTAGTGTCTGTGCTTCTATTAATGCTAATATATTGAAGTCGGTTGTGACAAGTCTCGA
ACTTTCTACCGCTCGACATGCATTCCCTCAAGCTGCTCTAGCTTATGAAGACGTTACAAA
AATTCGATAATATAGTATTTGGGGGAAATAGGAGCTGTCACCGGCTGATCCGAACCCCCG
TCGCGAATGCAGCAACCGTGCACAATTGAGAGGTATCAGTTCGAGCTAAGCTGCTAAGAT
GAAACGAGTGGGCGCTTATTTGCTACGACTGGCCGCGGGAGGCTCGGAGCAGCTCAGCAG
CGGCACCGAGCTTGCGGCCTGGCTCGGGAAAAGGCGCGGCTGGGTGGTCTCTGCCTGGGG
CTCCCGACAGCCTTCAGCAAGCCACGGACGCCACGTCACGGGTACTCGTGACGCCACATG
CAATTCGGGGGCAGCGACGACGTGCAGCATTGAAGGCGACGCCGCGGCGACTGCCGCAGC
CGCTGCCAGTCGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002458A_C01 KCC002458A_c01
         (553 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00008779.1| COG0784: FOG: CheY-like receiver [Rhodopseudo...    37  0.23
gb|AAL56601.1|AF449411_22 pilT-like protein [Myxococcus xanthus]       36  0.40
ref|ZP_00006172.1| COG1530: Ribonucleases G and E [Rhodobacter s...    34  1.2
dbj|BAA37084.1| MelC1 [Streptomyces griseus]                           34  1.2
ref|XP_314085.1| ENSANGP00000003691 [Anopheles gambiae] gi|30176...    34  1.2

>ref|ZP_00008779.1| COG0784: FOG: CheY-like receiver [Rhodopseudomonas palustris]
          Length = 493

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = -2

Query: 549 LAAAAAVAAASPSMLHVVAAPELHVASRVPVTWRPWLAEGCREPQAETTQPR----LFPS 382
           ++ AA  AAASP+    VAA      +  PV   P   + C EP+A   QP     + P 
Sbjct: 182 ISGAAPEAAASPATPETVAAT---APATAPVVDEPAPPQACAEPEAVAPQPAAPEPVAPQ 238

Query: 381 QAASSVPLLSCSEPPAASRSK*AP 310
             AS       +EP  A +++ AP
Sbjct: 239 AVASQAVAPEVAEPAPAQQAQTAP 262

>gb|AAL56601.1|AF449411_22 pilT-like protein [Myxococcus xanthus]
          Length = 574

 Score = 35.8 bits (81), Expect = 0.40
 Identities = 37/108 (34%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
 Frame = -2

Query: 546 AAAAAVAAASPSMLHVVAAPE-LHVASRVPVTWRPWLAEGCREPQAETTQPRLFPSQAAS 370
           AA A  AA +P+     AAP  +H A+    T  P  A   R P+   +QP   P  A +
Sbjct: 108 AATARPAAPAPAQPARPAAPAPVHAAAPSYRTPEPAPAPAYRTPEPAASQPYRTPEPAVA 167

Query: 369 SVPLLSCSEPPAASRSK*APTRFILAA*LELIPLNCARLLHSRRGFGS 226
            V   + +  PAA+R   AP R    A  EL  L    L   RRG  S
Sbjct: 168 QV---ARAPEPAAARPVAAPARTFTGAGRELAVL----LEEGRRGLAS 208

>ref|ZP_00006172.1| COG1530: Ribonucleases G and E [Rhodobacter sphaeroides]
          Length = 976

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 25/80 (31%), Positives = 34/80 (42%)
 Frame = -2

Query: 543 AAAAVAAASPSMLHVVAAPELHVASRVPVTWRPWLAEGCREPQAETTQPRLFPSQAASSV 364
           AAAAV   +P    VV+APE   A   P    P  A    EP A   + R    +     
Sbjct: 756 AAAAVPELAPEA--VVSAPEPAAAEPEPTPADPVAAPAAEEPAAPRKRTRTRKPKVTEEA 813

Query: 363 PLLSCSEPPAASRSK*APTR 304
           P  + +E PA + +  AP +
Sbjct: 814 PAEAAAEAPAEAPAAEAPAK 833

>dbj|BAA37084.1| MelC1 [Streptomyces griseus]
          Length = 127

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 25/77 (32%), Positives = 34/77 (43%), Gaps = 9/77 (11%)
 Frame = +3

Query: 336 REARSSSAAAPSLRPGSGKGAAGWSLPGAPDSLQQATDATSRVLVTPHAIRGQRRRAALK 515
           R A +++AA P L  G G+GAA      AP S ++     S +   P+  R   RR  + 
Sbjct: 13  RGALAAAAAVPLLSGGEGEGAA--EAAAAPRSQRRGRSTPSAISAGPYGSRSGERRRCVH 70

Query: 516 ATP---------RRLPQ 539
             P         RRLPQ
Sbjct: 71  RRPAAPHHEVRRRRLPQ 87

>ref|XP_314085.1| ENSANGP00000003691 [Anopheles gambiae] gi|30176696|gb|EAA09379.2|
            ENSANGP00000003691 [Anopheles gambiae str. PEST]
          Length = 2086

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 36/109 (33%), Positives = 45/109 (41%)
 Frame = +2

Query: 221  PADPNPRRECSNRAQLRGISSS*AAKMKRVGAYLLRLAAGGSEQLSSGTELAAWLGKRRG 400
            P    P    +  + LRG+S   A       A+  R AA   E   SGT  AA  GK+  
Sbjct: 1415 PLSQLPAANEAAASPLRGVSPGLATIAAPPKAFSPRSAASSKEP--SGT--AAGAGKQ-- 1468

Query: 401  WVVSAWGSRQPSASHGRHVTGTRDATCNSGAATTCSIEGDAAATAAAAA 547
                A GS  PSASH +  +    A  +S  A   S    AAAT +  A
Sbjct: 1469 ----ASGSTTPSASHAKDASKGEPAGSDSAGALKDSTNSTAAATGSKPA 1513



EST assemble image


clone accession position
1 HCL039c04_r AV641716 1 498
2 LCL033g12_r AV627916 41 372
3 LCL075b02_r AV630191 87 553




Chlamydomonas reinhardtii
Kazusa DNA Research Institute