Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002422A_C01 KCC002422A_c01
(410 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_221124.1| similar to ring finger B-box coiled-coil protei... 32 0.033
ref|XP_290731.1| similar to ring finger B-box coiled-coil protei... 32 0.033
ref|NP_258411.1| gene overexpressed in astrocytoma [Homo sapiens... 32 0.033
gb|EAA18507.1| processed variable antigen-related [Plasmodium yo... 30 0.043
ref|XP_208534.1| similar to hypothetical protein FLJ34836 [Homo ... 37 0.085
>ref|XP_221124.1| similar to ring finger B-box coiled-coil protein, GOA - human
[Rattus norvegicus]
Length = 642
Score = 31.6 bits (70), Expect(2) = 0.033
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 271 AQCPLCRASFGKDLKLSCNHELEDLIRL 354
A+CPLC+ F L+L NH L +L++L
Sbjct: 52 ARCPLCQEPFPDGLQLRKNHTLSELLQL 79
Score = 25.4 bits (54), Expect(2) = 0.033
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3
Query: 204 PATLPCGHNWMRRVLPA 254
P TLPCGHN+ L A
Sbjct: 19 PVTLPCGHNFCLACLGA 35
>ref|XP_290731.1| similar to ring finger B-box coiled-coil protein, GOA - human [Homo
sapiens] gi|25518274|pir||JC7753 ring finger B-box
coiled-coil protein, GOA - human
Length = 638
Score = 31.6 bits (70), Expect(2) = 0.033
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 271 AQCPLCRASFGKDLKLSCNHELEDLIRL 354
A+CPLC+ F L+L NH L +L++L
Sbjct: 52 ARCPLCQEPFPDGLQLRKNHTLSELLQL 79
Score = 25.4 bits (54), Expect(2) = 0.033
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3
Query: 204 PATLPCGHNWMRRVLPA 254
P TLPCGHN+ L A
Sbjct: 19 PVTLPCGHNFCLACLGA 35
>ref|NP_258411.1| gene overexpressed in astrocytoma [Homo sapiens]
gi|15741221|gb|AAK07687.1| gene overexpressed in
astrocytoma [Homo sapiens]
Length = 638
Score = 31.6 bits (70), Expect(2) = 0.033
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 271 AQCPLCRASFGKDLKLSCNHELEDLIRL 354
A+CPLC+ F L+L NH L +L++L
Sbjct: 52 ARCPLCQEPFPDGLQLRKNHTLSELLQL 79
Score = 25.4 bits (54), Expect(2) = 0.033
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3
Query: 204 PATLPCGHNWMRRVLPA 254
P TLPCGHN+ L A
Sbjct: 19 PVTLPCGHNFCLACLGA 35
>gb|EAA18507.1| processed variable antigen-related [Plasmodium yoelii yoelii]
Length = 623
Score = 30.4 bits (67), Expect(2) = 0.043
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 235 CVECFQQVQQRNAQCPLCRASFGKDLKLSCNHELEDLIR 351
C +C ++ ++ N CPLCR+ G K + N L +LI+
Sbjct: 187 CRDCLEKAKEYNDTCPLCRSYMGD--KQNVNILLAELIK 223
Score = 26.2 bits (56), Expect(2) = 0.043
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 204 PATLPCGHNWMRRVL 248
P T+PCGHN+ R L
Sbjct: 177 PVTIPCGHNFCRDCL 191
>ref|XP_208534.1| similar to hypothetical protein FLJ34836 [Homo sapiens]
Length = 214
Score = 36.6 bits (83), Expect = 0.085
Identities = 35/112 (31%), Positives = 46/112 (40%), Gaps = 12/112 (10%)
Frame = -2
Query: 376 RRRRAWSPGESGPQARGCRTASGPFQNLRGTVGTGRCAAGPAGSTRRIQLCPHGSVAGPH 197
R R +WS G + R C +S P G+ G G A+G G T GS +
Sbjct: 3 RLRASWSSGWAWAW-RACTRSSRPALPAPGSEGLGTRASGCRGCT--------GSPSSAG 53
Query: 196 PPAQCLATDRALWNLNIGPSSYAHP------------CSLAQRAPTSTRPCA 77
PPA CL + AL G + P C A+ +PTST PC+
Sbjct: 54 PPALCLISRWALAAFPRGRARDLQPAVPEPPTRSMGSCG-ARASPTSTTPCS 104
