KCC002419A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002419A_C01 KCC002419A_c01
ggccgctgctgattgagaacctgcccgtggacattgacgccgtgctggaccccgtcatcg
gcaagatgaccatcaagaagGGTCGCAACATCATCATGAAGATTGGCGACGCGGAGGTGC
AGTACGACAGCCGCTTCCGCCTGTACCTGCAGACCAAGCTGTCCAACCCGCACTTCAAGC
CGGAGGTGGCGGCGCAGACCACGCTGGTCAACTTCTGCGTGACGGAGAAGGGTCTGGAGG
ACCAGCTCCTGGCGCTGGTGGTGGACCACGAGCGCCCCGATCTGCAGGAGCAGGCAGCCG
GCCTGGTGCGCTCGCTGAACGAGTACAACATTACGCTGGTGGAGCTGGAGAACAACCTGC
TGTTCAACCTGGCCAACGCTACGGGCAACATCCTTGAGAATATCGAGCTGATTGAGGGCC
TGGAGGAGACCAAGCGCACCGCTGTGGAGATCGAGGAGAAGGTCAAGCTGGCCAAGCAGA
CCGAAATCCAGATTGCGAAGGCGCGCGAGGTGTACCGCCCTGTGGCTACCCGCGGCTCGC
TCACATACTTCCTCATTGACAACTTGAACGCCCTGGACCGTGTCTACCACTACTCCATGG
CCAACTTCGTCTTTGTGCTGAAGAAGGGTATGGACATGACGCCCGGTGGCAAGGACGAGA
GCAAGGTGCCGCTGGCTGAGCGGCTGAACCAGGAGGTGGACCTGGACAAGCGCGTGGAGC
TGCTGGTGGAGACCACCTGCTTCGTGCTCATCGGCTACGTGGCGCAGGGCCTGTTCGAGC
GCCACAAGCTGATTGTGGCGACGCAGCTTTGCATGCAGATCCTGCGCTCGCGCGGTGAGC
TGCACTACGCCAAGTTTGAGTACCTGCTGCGCGGCCCCAAGGTCATGGGTGCTGACAACC
CACTGCACGACTGGGTGTCGGACAGCGTGTGGGGCAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002419A_C01 KCC002419A_c01
         (939 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm gi|7...   615  e-175
gb|EAA40605.1| GLP_23_3934_6243 [Giardia lamblia ATCC 50803]          287  2e-76
sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary gi|85393|pir||S1...   259  6e-68
sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary gi|85326|pir||S1...   258  1e-67
prf||1714373A dynein:SUBUNIT=beta heavy chain                         258  1e-67

>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm gi|7484362|pir||T08030 dynein
            beta heavy chain - Chlamydomonas reinhardtii
            gi|514215|gb|AAA19956.1| dynein beta heavy chain
          Length = 4568

 Score =  615 bits (1585), Expect = e-175
 Identities = 312/312 (100%), Positives = 312/312 (100%)
 Frame = +3

Query: 3    PLLIENLPVDIDAVLDPVIGKMTIKKGRNIIMKIGDAEVQYDSRFRLYLQTKLSNPHFKP 182
            PLLIENLPVDIDAVLDPVIGKMTIKKGRNIIMKIGDAEVQYDSRFRLYLQTKLSNPHFKP
Sbjct: 3560 PLLIENLPVDIDAVLDPVIGKMTIKKGRNIIMKIGDAEVQYDSRFRLYLQTKLSNPHFKP 3619

Query: 183  EVAAQTTLVNFCVTEKGLEDQLLALVVDHERPDLQEQAAGLVRSLNEYNITLVELENNLL 362
            EVAAQTTLVNFCVTEKGLEDQLLALVVDHERPDLQEQAAGLVRSLNEYNITLVELENNLL
Sbjct: 3620 EVAAQTTLVNFCVTEKGLEDQLLALVVDHERPDLQEQAAGLVRSLNEYNITLVELENNLL 3679

Query: 363  FNLANATGNILENIELIEGLEETKRTAVEIEEKVKLAKQTEIQIAKAREVYRPVATRGSL 542
            FNLANATGNILENIELIEGLEETKRTAVEIEEKVKLAKQTEIQIAKAREVYRPVATRGSL
Sbjct: 3680 FNLANATGNILENIELIEGLEETKRTAVEIEEKVKLAKQTEIQIAKAREVYRPVATRGSL 3739

Query: 543  TYFLIDNLNALDRVYHYSMANFVFVLKKGMDMTPGGKDESKVPLAERLNQEVDLDKRVEL 722
            TYFLIDNLNALDRVYHYSMANFVFVLKKGMDMTPGGKDESKVPLAERLNQEVDLDKRVEL
Sbjct: 3740 TYFLIDNLNALDRVYHYSMANFVFVLKKGMDMTPGGKDESKVPLAERLNQEVDLDKRVEL 3799

Query: 723  LVETTCFVLIGYVAQGLFERHKLIVATQLCMQILRSRGELHYAKFEYLLRGPKVMGADNP 902
            LVETTCFVLIGYVAQGLFERHKLIVATQLCMQILRSRGELHYAKFEYLLRGPKVMGADNP
Sbjct: 3800 LVETTCFVLIGYVAQGLFERHKLIVATQLCMQILRSRGELHYAKFEYLLRGPKVMGADNP 3859

Query: 903  LHDWVSDSVWGS 938
            LHDWVSDSVWGS
Sbjct: 3860 LHDWVSDSVWGS 3871

>gb|EAA40605.1| GLP_23_3934_6243 [Giardia lamblia ATCC 50803]
          Length = 769

 Score =  287 bits (734), Expect = 2e-76
 Identities = 152/312 (48%), Positives = 209/312 (66%), Gaps = 1/312 (0%)
 Frame = +3

Query: 6    LLIENLPVDIDAVLDPVIGKMTIKKGRNIIMKIGDAEVQYDSRFRLYLQTKLSNPHFKPE 185
            ++IEN+   IDAVL+P++G+  IK+GR+  +K GD EV+YD  FRLY+QTK+ NPH+ PE
Sbjct: 147  VIIENIHETIDAVLNPLLGRNIIKRGRSKFIKFGDKEVEYDDNFRLYIQTKMPNPHYSPE 206

Query: 186  VAAQTTLVNFCVTEKGLEDQLLALVVDHERPDLQEQAAGLVRSLNEYNITLVELENNLLF 365
            + AQTTL+NF VT  GLEDQLLALVV  ERPDL+E  A L+R  NE+ ITL +LE +LL 
Sbjct: 207  IQAQTTLINFTVTIDGLEDQLLALVVSEERPDLEELKASLMRQQNEFKITLQQLEEDLLK 266

Query: 366  NLANATGNILENIELIEGLEETKRTAVEIEEKVKLAKQTEIQIAKAREVYRPVATRGSLT 545
             L++ATG+IL + +LIE LE+TK T+ EI EKVK AK TE  I KARE YRPVA R ++ 
Sbjct: 267  RLSSATGDILGDTDLIENLEKTKATSSEISEKVKEAKITEENINKAREQYRPVAARAAML 326

Query: 546  YFLIDNLNALDRVYHYSMANFVFVLKKGMDMTPGGKDESKVPLAERLNQE-VDLDKRVEL 722
            YFL+++LN +D  Y +S++ F+ V  +                A RL+Q+  D+ +RV +
Sbjct: 327  YFLLNSLNVIDHFYQFSLSAFITVFYR----------------AIRLSQKSEDVQERVNI 370

Query: 723  LVETTCFVLIGYVAQGLFERHKLIVATQLCMQILRSRGELHYAKFEYLLRGPKVMGADNP 902
            L++   F +  Y A+GLFERHKLI  +QLC  +LR    L   +F +LLRG   +  +N 
Sbjct: 371  LLDALTFDIYSYAARGLFERHKLIFISQLCFNVLRKDNNLPANEFNFLLRGTASVSRENA 430

Query: 903  LHDWVSDSVWGS 938
            L +++  S W S
Sbjct: 431  LSEFIPTSSWNS 442

>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary gi|85393|pir||S17653 dynein beta heavy
            chain, ciliary - sea urchin (Tripneustes gratilla)
            gi|10710|emb|CAA42170.1| Beta heavy chain of outer-arm
            axonemal dynein ATPase [Tripneustes gratilla]
            gi|227997|prf||1714372A dynein:SUBUNIT=beta heavy chain
          Length = 4466

 Score =  259 bits (661), Expect = 6e-68
 Identities = 145/311 (46%), Positives = 204/311 (64%)
 Frame = +3

Query: 6    LLIENLPVDIDAVLDPVIGKMTIKKGRNIIMKIGDAEVQYDSRFRLYLQTKLSNPHFKPE 185
            +LIEN+   ID VLDPV+G+ TIKKGR I  KIGD EV+Y+  FRL LQTKL+NPH+KPE
Sbjct: 3488 VLIENMEESIDPVLDPVLGRNTIKKGRYI--KIGDKEVEYNPDFRLILQTKLANPHYKPE 3545

Query: 186  VAAQTTLVNFCVTEKGLEDQLLALVVDHERPDLQEQAAGLVRSLNEYNITLVELENNLLF 365
            + AQTTL+NF VT  GLEDQLLA VV  ERPDL++  + L +  N++ I L ELE+NLL 
Sbjct: 3546 MQAQTTLINFTVTRDGLEDQLLANVVAQERPDLEKLKSDLTKQQNDFKIILKELEDNLLS 3605

Query: 366  NLANATGNILENIELIEGLEETKRTAVEIEEKVKLAKQTEIQIAKAREVYRPVATRGSLT 545
             L++A GN L +  L+E LE TKRTA EI  KV+ AK TE++I +ARE+YRP A R SL 
Sbjct: 3606 RLSSAEGNFLGDTALVENLETTKRTAAEISVKVEEAKVTEVKINEARELYRPAAARASLL 3665

Query: 546  YFLIDNLNALDRVYHYSMANFVFVLKKGMDMTPGGKDESKVPLAERLNQEVDLDKRVELL 725
            YF++++LN ++ +Y +S+  F  V                +P+A R     D+ +RV  L
Sbjct: 3666 YFILNDLNKINPIYQFSLKAFNTVF--------------SLPIA-RAEPCEDVKERVVNL 3710

Query: 726  VETTCFVLIGYVAQGLFERHKLIVATQLCMQILRSRGELHYAKFEYLLRGPKVMGADNPL 905
            ++   + +  Y  +GLFE  KLI  TQ+  Q+L  + E+   + ++LLR P  +G  +P+
Sbjct: 3711 IDCITYSVFIYTTRGLFEADKLIFTTQVAFQVLLMKKEIAQNELDFLLRFPIQVGLTSPV 3770

Query: 906  HDWVSDSVWGS 938
             D++++S WG+
Sbjct: 3771 -DFLTNSAWGA 3780

>sp|P39057|DYHC_ANTCR Dynein beta chain, ciliary gi|85326|pir||S17231 dynein beta heavy
            chain, ciliary - sea urchin (Anthocidaris crassispina)
            gi|217203|dbj|BAA00827.1| dynein beta-heavy chain
            [Anthocidaris crassispina]
          Length = 4466

 Score =  258 bits (658), Expect = 1e-67
 Identities = 143/311 (45%), Positives = 201/311 (63%)
 Frame = +3

Query: 6    LLIENLPVDIDAVLDPVIGKMTIKKGRNIIMKIGDAEVQYDSRFRLYLQTKLSNPHFKPE 185
            +LIEN+   ID VLDPV+G+ TIKKGR I  KIGD EV+Y+  FRL LQTKL+NPH+KPE
Sbjct: 3488 VLIENMEESIDPVLDPVLGRNTIKKGRYI--KIGDKEVEYNPEFRLILQTKLANPHYKPE 3545

Query: 186  VAAQTTLVNFCVTEKGLEDQLLALVVDHERPDLQEQAAGLVRSLNEYNITLVELENNLLF 365
            + AQTTL+NF VT  GLEDQLLA VV  ERPDL++  + L +  N++ I L ELE+NLL 
Sbjct: 3546 MQAQTTLINFTVTRDGLEDQLLANVVAQERPDLEKLKSDLTKQQNDFKIILKELEDNLLS 3605

Query: 366  NLANATGNILENIELIEGLEETKRTAVEIEEKVKLAKQTEIQIAKAREVYRPVATRGSLT 545
             L++A GN L +  L+E LE TKRTA EI  KV+ AK TE++I +ARE+YRP A R SL 
Sbjct: 3606 RLSSAEGNFLGDTALVENLETTKRTAAEISVKVEEAKVTEVKINEARELYRPAAARASLL 3665

Query: 546  YFLIDNLNALDRVYHYSMANFVFVLKKGMDMTPGGKDESKVPLAERLNQEVDLDKRVELL 725
            YF++++LN ++ +Y +S+  F  V    +                R     D+ +RV  L
Sbjct: 3666 YFILNDLNKINPIYQFSLKAFNTVFSLSI---------------ARAEPCEDVKERVVNL 3710

Query: 726  VETTCFVLIGYVAQGLFERHKLIVATQLCMQILRSRGELHYAKFEYLLRGPKVMGADNPL 905
            ++   + +  Y  +GLFE  KLI  TQ+  Q+L  + E+   + ++LLR P  +G  +P+
Sbjct: 3711 IDCITYSVFIYTTRGLFEADKLIFTTQVAFQVLLMKKEIAQNELDFLLRFPIQVGLTSPV 3770

Query: 906  HDWVSDSVWGS 938
             D++++S WG+
Sbjct: 3771 -DFLTNSAWGA 3780

>prf||1714373A dynein:SUBUNIT=beta heavy chain
          Length = 4466

 Score =  258 bits (658), Expect = 1e-67
 Identities = 143/311 (45%), Positives = 201/311 (63%)
 Frame = +3

Query: 6    LLIENLPVDIDAVLDPVIGKMTIKKGRNIIMKIGDAEVQYDSRFRLYLQTKLSNPHFKPE 185
            +LIEN+   ID VLDPV+G+ TIKKGR I  KIGD EV+Y+  FRL LQTKL+NPH+KPE
Sbjct: 3488 VLIENMEESIDPVLDPVLGRNTIKKGRYI--KIGDKEVEYNPEFRLILQTKLANPHYKPE 3545

Query: 186  VAAQTTLVNFCVTEKGLEDQLLALVVDHERPDLQEQAAGLVRSLNEYNITLVELENNLLF 365
            + AQTTL+NF VT  GLEDQLLA VV  ERPDL++  + L +  N++ I L ELE+NLL 
Sbjct: 3546 MQAQTTLINFTVTRDGLEDQLLANVVAQERPDLEKLKSDLTKQQNDFKIILKELEDNLLS 3605

Query: 366  NLANATGNILENIELIEGLEETKRTAVEIEEKVKLAKQTEIQIAKAREVYRPVATRGSLT 545
             L++A GN L +  L+E LE TKRTA EI  KV+ AK TE++I +ARE+YRP A R SL 
Sbjct: 3606 RLSSAEGNFLGDTALVENLETTKRTAAEISVKVEEAKVTEVKINEARELYRPAAARASLL 3665

Query: 546  YFLIDNLNALDRVYHYSMANFVFVLKKGMDMTPGGKDESKVPLAERLNQEVDLDKRVELL 725
            YF++++LN ++ +Y +S+  F  V    +                R     D+ +RV  L
Sbjct: 3666 YFILNDLNKINPIYQFSLKAFNTVFSLSI---------------ARAEPCEDVKERVVNL 3710

Query: 726  VETTCFVLIGYVAQGLFERHKLIVATQLCMQILRSRGELHYAKFEYLLRGPKVMGADNPL 905
            ++   + +  Y  +GLFE  KLI  TQ+  Q+L  + E+   + ++LLR P  +G  +P+
Sbjct: 3711 IDCITYSVFIYTTRGLFEADKLIFTTQVAFQVLLMKKEIAQNELDFLLRFPIQVGLTSPV 3770

Query: 906  HDWVSDSVWGS 938
             D++++S WG+
Sbjct: 3771 -DFLTNSAWGA 3780



EST assemble image


clone accession position
1 MXL013f09_r BP093780 1 448
2 MXL080g06_r BP097752 193 552
3 HCL031f02_r AV641323 431 939




Chlamydomonas reinhardtii
Kazusa DNA Research Institute