KCC002387A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002387A_C01 KCC002387A_c01
acttccaGCAGCCTTGGGCTCGCAGACATAGGAACCGGCTCTACTGGGGGATTTGGTGGC
TTCGACCTGACCGGCCAGCAGCATTTCCAGCATCCGCTTTTGGGCCGGCAAGCAGCCGGC
CCACCTGGGCCGCTGCCCAACTCGGGCGCGGACGCCTCTGTCCATACGGTGACTAGCTTC
TACTCGCACATGTCGGGGAATACCACCGGCGCGGCGTCCTCAGGCGCCGCGCACGAAGGC
GCCCCTTCCTCGCTCTTTTATCACTACCCGCTATGTAGAGGCAGCGTTCCTCCTGCTCGA
TGGGCTCACGCTTCCGCGGTAGTGGGCGGCACAATCTGGGTATATGGAGGAGTCGGGAAT
TCGGTGCTGGATGACCTCTGTGCGCTGGACACGGACACATTGTCCTGGCGCGTCGTTAGC
ACACATGCAGCTCGAAGTAAAGATCGACCGGAAAAGATGCTGGGGCACGCAGCCGCGGCC
ACGGAGACGAAGATCTGGATGTTTGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002387A_C01 KCC002387A_c01
         (507 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_173296.1| Kelch repeat-containing protein [Arabidopsis th...    51  9e-06
pir||G86319 F25I16.5 protein - Arabidopsis thaliana gi|9795595|g...    51  9e-06
dbj|BAB60943.1| P0682B08.13 [Oryza sativa (japonica cultivar-gro...    49  4e-05
dbj|BAC05149.1| unnamed protein product [Homo sapiens]                 49  5e-05
ref|XP_343533.1| similar to kelch domain containing 3; testis in...    47  1e-04

>ref|NP_173296.1| Kelch repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 27/81 (33%), Positives = 44/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 268 PLCRGSVPPARWAHASAVVGGTIWVYGGV-GNSVLDDLCALDTDTLSWRVVSTHAARSKD 444
           P+  G+ PP R +H+   VG  ++V+GG  G + L DL  LDT + +W+  S       +
Sbjct: 86  PMINGTPPPPRDSHSCTTVGDNLFVFGGTDGVNPLKDLYILDTSSHTWKCPSVRG----E 141

Query: 445 RPEKMLGHAAAATETKIWMFG 507
            PE   GH+A     ++++FG
Sbjct: 142 GPEAREGHSATLVGKRLFVFG 162

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 280 GSVPPARWAHASAVVGGTIWVYGGVGNS--VLDDLCALDTDTLSWRVVSTHAARSKDRPE 453
           G+ P AR +H+ +     + V GG       L D+  LDTDTL W+ ++T       R  
Sbjct: 196 GNPPSARDSHSCSSWKNKLVVIGGEDGHDYYLSDVHILDTDTLIWKELNTSGQLLTPR-- 253

Query: 454 KMLGHAAAATETKIWMFG 507
              GH   +     ++FG
Sbjct: 254 --AGHVTVSLGRNFFVFG 269

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 280 GSVPPARWAHASAVVGGTIWVYGGV--GNSVLDDLCALDTDTLSWRVVST 423
           G +   R  H +  +G   +V+GG     ++ DDL  LD DT  W  V T
Sbjct: 247 GQLLTPRAGHVTVSLGRNFFVFGGFTDAQNLYDDLYVLDVDTCIWSKVLT 296

>pir||G86319 F25I16.5 protein - Arabidopsis thaliana
           gi|9795595|gb|AAF98413.1|AC026238_5 Hypothetical protein
           [Arabidopsis thaliana]
          Length = 556

 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 27/81 (33%), Positives = 44/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 268 PLCRGSVPPARWAHASAVVGGTIWVYGGV-GNSVLDDLCALDTDTLSWRVVSTHAARSKD 444
           P+  G+ PP R +H+   VG  ++V+GG  G + L DL  LDT + +W+  S       +
Sbjct: 68  PMINGTPPPPRDSHSCTTVGDNLFVFGGTDGVNPLKDLYILDTSSHTWKCPSVRG----E 123

Query: 445 RPEKMLGHAAAATETKIWMFG 507
            PE   GH+A     ++++FG
Sbjct: 124 GPEAREGHSATLVGKRLFVFG 144

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 280 GSVPPARWAHASAVVGGTIWVYGGVGNS--VLDDLCALDTDTLSWRVVSTHAARSKDRPE 453
           G+ P AR +H+ +     + V GG       L D+  LDTDTL W+ ++T       R  
Sbjct: 178 GNPPSARDSHSCSSWKNKLVVIGGEDGHDYYLSDVHILDTDTLIWKELNTSGQLLTPR-- 235

Query: 454 KMLGHAAAATETKIWMFG 507
              GH   +     ++FG
Sbjct: 236 --AGHVTVSLGRNFFVFG 251

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 280 GSVPPARWAHASAVVGGTIWVYGGV--GNSVLDDLCALDTDTLSWRVVST 423
           G +   R  H +  +G   +V+GG     ++ DDL  LD DT  W  V T
Sbjct: 229 GQLLTPRAGHVTVSLGRNFFVFGGFTDAQNLYDDLYVLDVDTCIWSKVLT 278

>dbj|BAB60943.1| P0682B08.13 [Oryza sativa (japonica cultivar-group)]
          Length = 624

 Score = 48.9 bits (115), Expect = 4e-05
 Identities = 26/82 (31%), Positives = 41/82 (49%), Gaps = 1/82 (1%)
 Frame = +1

Query: 265 YPLCRGSVPPARWAHASAVVGGTIWVYGG-VGNSVLDDLCALDTDTLSWRVVSTHAARSK 441
           YP   G  PP RW H++    G ++V+GG  G     D+  L+ +T++W  ++T  AR  
Sbjct: 11  YPKVVGFNPPERWGHSACFFEGVVYVFGGCCGGLHFSDVLTLNLETMAWSSLATTGARPG 70

Query: 442 DRPEKMLGHAAAATETKIWMFG 507
            R      H AA    ++ +FG
Sbjct: 71  TRD----SHGAALVGHRMMVFG 88

 Score = 38.9 bits (89), Expect = 0.037
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 277 RGSVPPARWAHASAVVGGTIWVYGGVGN-SVLDDLCALDTDTLSWRVVSTHAARSKDRPE 453
           +G+ P  R  HA+  VG  ++V GGVG+     D   LD    SW    T       +P+
Sbjct: 220 KGASPGVRAGHAAVGVGSKVYVIGGVGDKQYYSDAWILDVANRSW----TQLEICGQQPQ 275

Query: 454 KMLGHAAAATETKIWMFG 507
               H+A    T I ++G
Sbjct: 276 GRFSHSAVVLNTDIAIYG 293

>dbj|BAC05149.1| unnamed protein product [Homo sapiens]
          Length = 323

 Score = 48.5 bits (114), Expect = 5e-05
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
 Frame = +1

Query: 139 NSGADASVHTVTSFYSHMSGNTTGAASSGAAHEGAPSSLFYHYPLCRGSVPPARWAHASA 318
           N  A A  H V SF  + SG           H  +  +  +  P   G+VP AR  H++ 
Sbjct: 16  NHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFSADTHKWFTPRVSGTVPGARDGHSAC 75

Query: 319 VVGGTIWVYGGV---GNSVLDDLCALDTDTLSWRVVSTHAARSKDRPEKMLGHAAAATET 489
           V+G  ++++GG     +   +D+  LDT T++W ++ T  + ++ R      H+A    +
Sbjct: 76  VLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRD----FHSATMLGS 131

Query: 490 KIWMFG 507
            +++FG
Sbjct: 132 HMYVFG 137

>ref|XP_343533.1| similar to kelch domain containing 3; testis intracellular mediator
           protein [Rattus norvegicus]
          Length = 323

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
 Frame = +1

Query: 139 NSGADASVHTVTSFYSHMSGNTTGAASSGAAHEGAPSSLFYHYPLCRGSVPPARWAHASA 318
           N  A A  H V SF  + SG           H     +  +  P   G+VP AR  H++ 
Sbjct: 16  NHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNADTHKWSTPRVSGTVPGARDGHSAC 75

Query: 319 VVGGTIWVYGG---VGNSVLDDLCALDTDTLSWRVVST--HAARSKDRPEKMLGHAAAAT 483
           V+G  ++++GG   + +   +D+  LDT T++W +V T  + AR +D       H+A   
Sbjct: 76  VLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRD------FHSATML 129

Query: 484 ETKIWMFG 507
              +++FG
Sbjct: 130 GNHMYVFG 137



EST assemble image


clone accession position
1 LCL099e01_r AV631767 1 470
2 HCL027a04_r AV641056 8 507




Chlamydomonas reinhardtii
Kazusa DNA Research Institute