KCC002383A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002383A_C01 KCC002383A_c01
CTGACCGGCTTCGGCTGGTAACTTAAAGCTCAAGGCACAGCAGGGACGAGAGAGTAAACC
GAGAGCGACCGAAATGTCTGCTCAACGCAAGAACGCGATAAGCGTTGTCAAGGCAGACGC
GAGGTCAAGGCTCGAGGCTGCAATTGATGAGAATGACGAACAGGCTTACGACGAGGCGCT
ACTCGGAGCTGCGAATGGAGGTGTCGAGGGTAATGGCTTTGCCCGCCAGTCGGCTGGCGC
GGGTGCACGCACCACGTCCGGCCGCAACTCCATCACTGGCGACCGCACCCTGTCGCGCGG
CTCCATCCTCTCCGTGGCCCCCAAGTGGTTTGTGCGTGACTACATGGCCCTGAAGGAGAT
TGTCTTCAGCAGCTACATCAACCTGATGCTGCTGTGTGCGCCACTGGGCTGGGCCAGCGC
CTACTTCAAGTGGGGCGCGGTGGCCACCTTCTCCCTCAACTTCCTGGCGCTCATCCCGCT
GGCACTTATCCTGGGCGACATCACTGAGGACCTGGCGGTGCGCTTCGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002383A_C01 KCC002383A_c01
         (530 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_588042.1| CaCA proton/calcium exchanger [Schizosaccharomy...    59  5e-08
pir||T41639 ion transporter - fission yeast (Schizosaccharomyces...    59  5e-08
gb|AAC08353.1| calcium/proton exchanger [Neurospora crassa]            57  2e-07
ref|XP_327361.1| hypothetical protein ( (AF053229) calcium/proto...    57  2e-07
ref|XP_328417.1| hypothetical protein [Neurospora crassa] gi|289...    50  2e-05

>ref|NP_588042.1| CaCA proton/calcium exchanger [Schizosaccharomyces pombe]
           gi|7492439|pir||T41141 probable caCA proton/calcium
           exchanger - fission yeast  (Schizosaccharomyces pombe)
           gi|3080507|emb|CAA18637.1| SPCC1795.02c
           [Schizosaccharomyces pombe]
          Length = 412

 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 27/59 (45%), Positives = 39/59 (65%)
 Frame = +2

Query: 353 KEIVFSSYINLMLLCAPLGWASAYFKWGAVATFSLNFLALIPLALILGDITEDLAVRFG 529
           K ++ SSY NLML+  P+G  + +F+W A + F LN LA+IPLA +L   TE L++  G
Sbjct: 54  KSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQLSIISG 112

>pir||T41639 ion transporter - fission yeast (Schizosaccharomyces pombe)
           (fragment) gi|4164420|emb|CAA22837.1| SPCC895.01
           [Schizosaccharomyces pombe]
          Length = 394

 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 27/59 (45%), Positives = 39/59 (65%)
 Frame = +2

Query: 353 KEIVFSSYINLMLLCAPLGWASAYFKWGAVATFSLNFLALIPLALILGDITEDLAVRFG 529
           K ++ SSY NLML+  P+G  + +F+W A + F LN LA+IPLA +L   TE L++  G
Sbjct: 36  KSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQLSIISG 94

>gb|AAC08353.1| calcium/proton exchanger [Neurospora crassa]
          Length = 443

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 42/69 (60%)
 Frame = +2

Query: 323 KWFVRDYMALKEIVFSSYINLMLLCAPLGWASAYFKWGAVATFSLNFLALIPLALILGDI 502
           K+  R +   K  + SS+IN++L+  PLG  +    W A A F+LNF A+IPLA +L   
Sbjct: 50  KYPTRVWNVTKVTLLSSWINILLIFVPLGIIAGERGWSAPAVFTLNFFAIIPLAAVLSFA 109

Query: 503 TEDLAVRFG 529
           TE++A R G
Sbjct: 110 TEEIAHRLG 118

>ref|XP_327361.1| hypothetical protein ( (AF053229) calcium/proton exchanger
           [Neurospora crassa] ) gi|28921828|gb|EAA31104.1|
           hypothetical protein ( (AF053229) calcium/proton
           exchanger [Neurospora crassa] )
          Length = 443

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 42/69 (60%)
 Frame = +2

Query: 323 KWFVRDYMALKEIVFSSYINLMLLCAPLGWASAYFKWGAVATFSLNFLALIPLALILGDI 502
           K+  R +   K  + SS+IN++L+  PLG  +    W A A F+LNF A+IPLA +L   
Sbjct: 50  KYPTRVWNVTKVTLLSSWINILLIFVPLGIIAGERGWSAPAVFTLNFFAIIPLAAVLSFA 109

Query: 503 TEDLAVRFG 529
           TE++A R G
Sbjct: 110 TEEIAHRLG 118

>ref|XP_328417.1| hypothetical protein [Neurospora crassa] gi|28923899|gb|EAA33061.1|
           hypothetical protein [Neurospora crassa]
          Length = 603

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 25/61 (40%), Positives = 43/61 (69%), Gaps = 1/61 (1%)
 Frame = +2

Query: 350 LKEIVFSSYINLMLLCAPLGWASAYFKW-GAVATFSLNFLALIPLALILGDITEDLAVRF 526
           ++  + +S++N++L+ AP+G A  Y +    VA F +NF+A+IPLA +LG  TE++A+R 
Sbjct: 175 IRRTLLNSWLNVLLVAAPIGIAINYVEAVPRVAVFVVNFIAIIPLAAMLGFATEEIALRT 234

Query: 527 G 529
           G
Sbjct: 235 G 235



EST assemble image


clone accession position
1 HCL026c11_r AV641018 1 523
2 HCL026d10_r AV641025 1 530
3 MXL012h12_r BP093743 5 299
4 MX235h02_r BP091238 6 292
5 MXL039a10_r BP095263 12 492




Chlamydomonas reinhardtii
Kazusa DNA Research Institute