Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002372A_C01 KCC002372A_c01
(984 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_863859.1| probable ubiquinone/menaquinone biosynthesis me... 171 2e-41
ref|XP_330219.1| hypothetical protein [Neurospora crassa] gi|289... 144 2e-33
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 59 1e-07
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 59 1e-07
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 59 1e-07
>ref|NP_863859.1| probable ubiquinone/menaquinone biosynthesis methyltransferase
[Pirellula sp.] gi|32443011|emb|CAD71532.1| probable
ubiquinone/menaquinone biosynthesis methyltransferase
[Pirellula sp.]
Length = 251
Score = 171 bits (433), Expect = 2e-41
Identities = 100/256 (39%), Positives = 150/256 (58%), Gaps = 3/256 (1%)
Frame = +2
Query: 149 EKLKLSSMKDDLTVLRHMWFGSKKGDDHAARLESFYGPQAAAYDAFRSRFLWGRRPMLAA 328
E +K +S DDL +L H+ F +G+ H RLESFY QA+ YD+FR+R L GR +++
Sbjct: 3 EAIKPTSRFDDLKILWHLLFRPVRGNTHGERLESFYEGQASHYDSFRARLLHGRSELMSW 62
Query: 329 VAARLAERSNLIWVDLGGGTGENVDMMADYIDLAKFKSIYVVDLCHSLCEVAKKKAKAKG 508
V N +WVD+G GTG N+ + + +++VDL SL ++A ++ + +
Sbjct: 63 VDFP----DNGVWVDIGAGTGHNLFSIEERSK--SLAEVHLVDLSPSLLQIASERIEERQ 116
Query: 509 WKNVQVVEADACQFAPPEGTATLITFSYSLTMIPPFHNVIDQACSYLSQDGLVGVADFYV 688
NV + ADA QF PE + ++TFSYSLTMIP + + A L G++ V DF+V
Sbjct: 117 LSNVTLHHADATQFELPENSVDVVTFSYSLTMIPDWFESVLIARRILKPGGVIAVTDFHV 176
Query: 689 SGKY-DLPLRQMPWSRRFFWRSIFDIDNIDIGPERRAYLEQ--KLERVWEQNTQGSIPYV 859
S K+ P RQ W RR FW F DN+ + + A L + K+ER E+ GS+PY+
Sbjct: 177 SRKHAAAPSRQHGWLRRTFWSLWFASDNVYLSSDHLAMLHRQFKIERCEER--LGSVPYM 234
Query: 860 PWLRAPYYVWIGRLPS 907
P ++APYY+++GR P+
Sbjct: 235 PLVKAPYYLFLGRKPA 250
>ref|XP_330219.1| hypothetical protein [Neurospora crassa] gi|28927226|gb|EAA36182.1|
hypothetical protein [Neurospora crassa]
Length = 908
Score = 144 bits (364), Expect = 2e-33
Identities = 106/315 (33%), Positives = 143/315 (44%), Gaps = 82/315 (26%)
Frame = +2
Query: 242 LESFYGPQAAAYDAFRSRFLWGRRPMLAAVAARL-------------------------- 343
LESFY QA YDA R L GR MLA A++L
Sbjct: 106 LESFYRSQADIYDATRGTLLKGREDMLALAASQLRYKVEAGLGGLGGAGDGLEKRQRNGK 165
Query: 344 ----------AERSNLIWVDLGGGTGENVDMMADYIDLAKF-KSIYVVDLCHSLCEVAKK 490
R IWVD+GGGTG N++ MA ++++++F K++Y+VD SLCEVA+K
Sbjct: 166 TCVTVAGTGTGTRRKPIWVDVGGGTGWNIEAMAKFVNVSEFFKTVYLVDFSPSLCEVARK 225
Query: 491 KAKAKGWKNVQVVEADACQFAPPE------------------------------GTATLI 580
+ GW+NV+V+ DA +F + A LI
Sbjct: 226 RFARLGWENVRVICTDARKFRLEDYEDVDEGESGSGDSSPSLSGWWGETKPGRHAGAELI 285
Query: 581 TFSYSLTMIPPFHNVIDQACSYLSQDGLVGVADFYVSGKYD---------LPLRQMPWSR 733
T SYSL+M+P + ++ID S L+ GL+ V DFY K D L R + +
Sbjct: 286 TMSYSLSMMPDYFSIIDSLESLLAPHGLIAVVDFYAQSKVDFTFRNYTGGLMNRHVGYFA 345
Query: 734 RFFWRSIFDIDNIDIGPERRAYLEQKLERVW----EQNTQGSIPYVPWLRAPYYVWIGRL 901
R FWRS FD D + + P RR YLE + V NT G+I PYY+W+G L
Sbjct: 346 RNFWRSWFDADRVSLEPARRDYLEYRFGTVLTVNARNNTLGAI--------PYYIWLGCL 397
Query: 902 --PSVGHALHEERVE 940
P +L E VE
Sbjct: 398 KKPFSTSSLPHEIVE 412
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 58.9 bits (141), Expect = 1e-07
Identities = 88/311 (28%), Positives = 122/311 (38%), Gaps = 20/311 (6%)
Frame = -2
Query: 965 RWAGTWAAAPRAPRAGRGQR-----WAGGQSTRSRGRAATARRGSNPGCSAPT--RAPAS 807
R A W + R GR + W+ ++T+ RGR+ +ARRG + S T R+ +
Sbjct: 482 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 541
Query: 806 APGRRGARGRCQCCRCRRSIAR-------RNGATRASGAGAGRTCRSRRSRQRPPGRLGT 648
P RRG R R + RRS +R R+ G RT RRSR R P R +
Sbjct: 542 TPARRG-RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 600
Query: 647 GTSKPGR*RCGTVESS*ASRRR**ASRCPQGAQIGKRRPP--RPGHSSSPWPSPSSWPPR 474
+ P R R G S +RR SR P + R P R G S S P+
Sbjct: 601 RSRSPAR-RSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRS 659
Query: 473 TASGTGRPRRWT*TSPGRCNQPSYRHSPQCHHPGQPR*GSSARPGGQQLQRAWACDPRGT 294
GR R + GR S+ +PQ + R GSS+ + R R
Sbjct: 660 RTPRRGRSRSRSLVRRGR----SHSRTPQ----RRGRSGSSSE--RKNKSRTSQRRSRSN 709
Query: 293 ATGKHHRQRPGARR----SSPGEQRDHRPSCCRTTYGAERSGHPSCC*A*ASPGRSSSWC 126
++ + + R +RR SSP + R S R+ G+ +P R S
Sbjct: 710 SSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKS----QTPPRRSRSG 765
Query: 125 SSQAGRHDPTP 93
SSQ TP
Sbjct: 766 SSQPKAKSRTP 776
Score = 57.4 bits (137), Expect = 4e-07
Identities = 93/322 (28%), Positives = 128/322 (38%), Gaps = 41/322 (12%)
Frame = -2
Query: 935 RAPRAGRGQRWAGGQSTRSRGRAAT-ARRG-SNPGCSAPTRAPASAPGRRGARGRCQCCR 762
R+ A RG+ + +TR R R+ T ARRG S A R+ + P RR +R R R
Sbjct: 518 RSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARR 577
Query: 761 CR---RSIARRNGATRA--------------SGAGAGRT-CRSRRSRQRPPGRLGTGTSK 636
R R+ ARR TR+ SG RT R RSR R P R G S+
Sbjct: 578 GRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSR 637
Query: 635 PGR*RCGTVESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWP-----SPSSWPPRT 471
R G S +RR SR P+ + R R G S S P S SS +
Sbjct: 638 TPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKN 697
Query: 470 ASGTGRPRRWT*TSPG-RCNQPSYRHSPQCHHP----------GQPR*GSSARPGGQ--- 333
S T + R + +SP + ++ S R S P + GSS P +
Sbjct: 698 KSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT 757
Query: 332 --QLQRAWACDPRGTATGKHHRQRPGARRSSPGEQRDHRPSCCRTTYGAERSGHPSCC*A 159
+ R+ + P+ + R R + S P +Q+ PS R ++ + S HP
Sbjct: 758 PPRRSRSGSSQPKAKSRTPPRRSRSSS--SPPPKQKSKTPS--RQSHSSS-SPHPKV--K 810
Query: 158 *ASPGRSSSWCSSQAGRHDPTP 93
+P R S S QA TP
Sbjct: 811 SGTPPRQGSITSPQANEQSVTP 832
Score = 52.8 bits (125), Expect = 9e-06
Identities = 71/258 (27%), Positives = 95/258 (36%), Gaps = 16/258 (6%)
Frame = -2
Query: 941 APRAPRAGRGQRWAGGQSTRSRGRAATARRGSNPGCSAPTRAPASAPGRRGARGRCQC-- 768
+P+ R+ QRW +S + RGR+ + +R PG S R RGR
Sbjct: 475 SPQWRRSRSAQRWGRSRSPQRRGRSRSPQR---PGWSRSRNTQRRGRSRSARRGRSHSRS 531
Query: 767 ----CRCRRSIARRNGATR----ASGAGAGRTCRSRRSRQRPPGRLGTGTSK-PGR*RCG 615
R R R G +R A RT RRSR R P R G S+ P R R
Sbjct: 532 PATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR 591
Query: 614 TVESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWP-----SPSSWPPRTASGTGRP 450
T S RR S + + R P R G S S P S S P R +GR
Sbjct: 592 T--RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARR---SGRS 646
Query: 449 RRWT*TSPGRCNQPSYRHSPQCHHPGQPR*GSSARPGGQQLQRAWACDPRGTATGKHHRQ 270
R T GR + R G+ R S R G + G+++ + ++
Sbjct: 647 RSRTPARRGRSRSRTPRR-------GRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKS 699
Query: 269 RPGARRSSPGEQRDHRPS 216
R RRS + + S
Sbjct: 700 RTSQRRSRSNSSPEMKKS 717
Score = 42.0 bits (97), Expect = 0.016
Identities = 52/209 (24%), Positives = 73/209 (34%), Gaps = 10/209 (4%)
Frame = -2
Query: 938 PRAPRAGRGQRWAGGQSTRSRGRAATARRGSNPGCSAPTRAPASAPGRRGARGRCQCCRC 759
PR R+G S++ + ++ T R S S P + + P R+ +
Sbjct: 759 PRRSRSG---------SSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKV 809
Query: 758 RRSIARRNGATRASGAGAGRTCRSRRS----------RQRPPGRLGTGTSKPGR*RCGTV 609
+ R G+ + A RRS + R P R S P R V
Sbjct: 810 KSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPR-----V 864
Query: 608 ESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWPSPSSWPPRTASGTGRPRRWT*TS 429
+SS R+ S PQ P + HS S PSPS RT PRR S
Sbjct: 865 KSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTT-----PRRSRSVS 919
Query: 428 PGRCNQPSYRHSPQCHHPGQPR*GSSARP 342
P C+ R P+ H G + +P
Sbjct: 920 P--CSNVESRLLPRYSHSGSSSPDTKVKP 946
Score = 34.3 bits (77), Expect = 3.4
Identities = 52/177 (29%), Positives = 70/177 (39%), Gaps = 9/177 (5%)
Frame = +3
Query: 480 WPRRRRRPRAGRMSRSWRPTLANLRPLRAPRRSSPSPTRSR*FHRSTTSSTRLARTCPKT 659
W R R R GR + R + P R S +P R R RS T + R +R+
Sbjct: 507 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRS---- 561
Query: 660 AWWALPTST*AASTTCPCARCPGRAVSSGDRSSTSTTLTSAPSAAPTWSRSWSACGSRTP 839
PT + S T P R R+ + R S + + S + + +R SRTP
Sbjct: 562 ---RTPTRRRSRSRT-PARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 617
Query: 840 ------RVRSPTCRGCAPPTTCGLAACPALATPCTRS---AWSGRPCSRPPSCTRSR 983
R R+P RG + T PA + +RS A GR SR P RSR
Sbjct: 618 ARRGRSRSRTPARRGRSRSRT------PARRSGRSRSRTPARRGRSRSRTPRRGRSR 668
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 58.9 bits (141), Expect = 1e-07
Identities = 88/311 (28%), Positives = 122/311 (38%), Gaps = 20/311 (6%)
Frame = -2
Query: 965 RWAGTWAAAPRAPRAGRGQR-----WAGGQSTRSRGRAATARRGSNPGCSAPT--RAPAS 807
R A W + R GR + W+ ++T+ RGR+ +ARRG + S T R+ +
Sbjct: 517 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 576
Query: 806 APGRRGARGRCQCCRCRRSIAR-------RNGATRASGAGAGRTCRSRRSRQRPPGRLGT 648
P RRG R R + RRS +R R+ G RT RRSR R P R +
Sbjct: 577 TPARRG-RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 635
Query: 647 GTSKPGR*RCGTVESS*ASRRR**ASRCPQGAQIGKRRPP--RPGHSSSPWPSPSSWPPR 474
+ P R R G S +RR SR P + R P R G S S P+
Sbjct: 636 RSRSPAR-RSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRS 694
Query: 473 TASGTGRPRRWT*TSPGRCNQPSYRHSPQCHHPGQPR*GSSARPGGQQLQRAWACDPRGT 294
GR R + GR S+ +PQ + R GSS+ + R R
Sbjct: 695 RTPRRGRSRSRSLVRRGR----SHSRTPQ----RRGRSGSSSE--RKNKSRTSQRRSRSN 744
Query: 293 ATGKHHRQRPGARR----SSPGEQRDHRPSCCRTTYGAERSGHPSCC*A*ASPGRSSSWC 126
++ + + R +RR SSP + R S R+ G+ +P R S
Sbjct: 745 SSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKS----QTPPRRSRSG 800
Query: 125 SSQAGRHDPTP 93
SSQ TP
Sbjct: 801 SSQPKAKSRTP 811
Score = 52.8 bits (125), Expect = 9e-06
Identities = 71/258 (27%), Positives = 95/258 (36%), Gaps = 16/258 (6%)
Frame = -2
Query: 941 APRAPRAGRGQRWAGGQSTRSRGRAATARRGSNPGCSAPTRAPASAPGRRGARGRCQC-- 768
+P+ R+ QRW +S + RGR+ + +R PG S R RGR
Sbjct: 510 SPQWRRSRSAQRWGRSRSPQRRGRSRSPQR---PGWSRSRNTQRRGRSRSARRGRSHSRS 566
Query: 767 ----CRCRRSIARRNGATR----ASGAGAGRTCRSRRSRQRPPGRLGTGTSK-PGR*RCG 615
R R R G +R A RT RRSR R P R G S+ P R R
Sbjct: 567 PATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR 626
Query: 614 TVESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWP-----SPSSWPPRTASGTGRP 450
T S RR S + + R P R G S S P S S P R +GR
Sbjct: 627 T--RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARR---SGRS 681
Query: 449 RRWT*TSPGRCNQPSYRHSPQCHHPGQPR*GSSARPGGQQLQRAWACDPRGTATGKHHRQ 270
R T GR + R G+ R S R G + G+++ + ++
Sbjct: 682 RSRTPARRGRSRSRTPRR-------GRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKS 734
Query: 269 RPGARRSSPGEQRDHRPS 216
R RRS + + S
Sbjct: 735 RTSQRRSRSNSSPEMKKS 752
Score = 52.4 bits (124), Expect = 1e-05
Identities = 81/287 (28%), Positives = 114/287 (39%), Gaps = 23/287 (8%)
Frame = -2
Query: 884 RSRGRAATARRGSNPGCSAPTRAPASAPGRRGARGRCQCCRCRRSI--ARRNGATRASGA 711
RSR R T RR + + R+ + P RR +R R R RS ARR+G +R+
Sbjct: 593 RSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSR-- 650
Query: 710 GAGRTCRSRRSRQRPPGRLGTGTSKPGR*RCGTVESS*ASRRR**ASRCPQGAQIGKRRP 531
R RSR R P R G S+ R G S +RR SR P+ + R
Sbjct: 651 ---TPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSL 707
Query: 530 PRPGHSSSPWP-----SPSSWPPRTASGTGRPRRWT*TSPG-RCNQPSYRHSPQCHHP-- 375
R G S S P S SS + S T + R + +SP + ++ S R S P
Sbjct: 708 VRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRS 767
Query: 374 --------GQPR*GSSARPGGQ-----QLQRAWACDPRGTATGKHHRQRPGARRSSPGEQ 234
+ GSS P + + R+ + P+ + R R + S P +Q
Sbjct: 768 KAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSS--SPPPKQ 825
Query: 233 RDHRPSCCRTTYGAERSGHPSCC*A*ASPGRSSSWCSSQAGRHDPTP 93
+ PS R ++ + S HP +P R S S QA TP
Sbjct: 826 KSKTPS--RQSHSSS-SPHPKV--KSGTPPRQGSITSPQANEQSVTP 867
Score = 42.0 bits (97), Expect = 0.016
Identities = 52/209 (24%), Positives = 73/209 (34%), Gaps = 10/209 (4%)
Frame = -2
Query: 938 PRAPRAGRGQRWAGGQSTRSRGRAATARRGSNPGCSAPTRAPASAPGRRGARGRCQCCRC 759
PR R+G S++ + ++ T R S S P + + P R+ +
Sbjct: 794 PRRSRSG---------SSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKV 844
Query: 758 RRSIARRNGATRASGAGAGRTCRSRRS----------RQRPPGRLGTGTSKPGR*RCGTV 609
+ R G+ + A RRS + R P R S P R V
Sbjct: 845 KSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPR-----V 899
Query: 608 ESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWPSPSSWPPRTASGTGRPRRWT*TS 429
+SS R+ S PQ P + HS S PSPS RT PRR S
Sbjct: 900 KSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTT-----PRRSRSVS 954
Query: 428 PGRCNQPSYRHSPQCHHPGQPR*GSSARP 342
P C+ R P+ H G + +P
Sbjct: 955 P--CSNVESRLLPRYSHSGSSSPDTKVKP 981
Score = 38.9 bits (89), Expect = 0.14
Identities = 70/226 (30%), Positives = 90/226 (38%), Gaps = 20/226 (8%)
Frame = -2
Query: 935 RAPRAGRGQRWAGGQSTRSRGRAAT-------ARRGSNPGCSAPTRAPASAPGRRGARGR 777
R P R R TR R R+ T +R ++P +R+ S RR +R R
Sbjct: 1938 RTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSR 1997
Query: 776 CQCCRCRRSIARRNGATRASGAGAGRTCRSRRSRQRPPGRLGTGTSKPGR*RCGTVESS* 597
RRS +R + TR RRSR R P K R R S
Sbjct: 1998 TSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTP----LLPRKRSRSR-----SPL 2048
Query: 596 ASRRR**ASRCPQGAQIGK----RRPP----RPGHSSSPWPSPSSWPP--RTASGTGRPR 447
A RRR SR P+ A+ GK R PP R SS S S+ PP R SG+ P
Sbjct: 2049 AIRRR-SRSRTPRTAR-GKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPP 2106
Query: 446 RWT*TSPGRC-NQPSYRHSP--QCHHPGQPR*GSSARPGGQQLQRA 318
+S C ++PS +P +C PG S+R LQ+A
Sbjct: 2107 VALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQA 2152
Score = 35.0 bits (79), Expect = 2.0
Identities = 45/167 (26%), Positives = 62/167 (36%), Gaps = 12/167 (7%)
Frame = +3
Query: 420 STWRSSSPSTWSTCATRCARW-------PRRRRRPRAGRMSRSWRPTLANLRPLRAPRRS 578
S + S SP+ + T R P R+R R+ W+ + + P R
Sbjct: 1818 SGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSR 1877
Query: 579 SPSPTRSR*FHRSTTSSTRLARTCPKTAWWALPTST*AASTTCPCARCPGRA-----VSS 743
S +P SR RS TS R+ +T+ T + S P +R R+
Sbjct: 1878 SRTPLISRRRSRSRTSPVSRRRSRSRTS----VTRRRSRSRASPVSRRRSRSRTPPVTRR 1933
Query: 744 GDRSSTSTTLTSAPSAAPTWSRSWSACGSRTPRVRSPTCRGCAPPTT 884
RS T TT + S P +R S SRTP V R P T
Sbjct: 1934 RSRSRTPTTRRRSRSRTPPVTRRRSR--SRTPPVTRRRSRSRTSPIT 1978
Score = 34.3 bits (77), Expect = 3.4
Identities = 52/177 (29%), Positives = 70/177 (39%), Gaps = 9/177 (5%)
Frame = +3
Query: 480 WPRRRRRPRAGRMSRSWRPTLANLRPLRAPRRSSPSPTRSR*FHRSTTSSTRLARTCPKT 659
W R R R GR + R + P R S +P R R RS T + R +R+
Sbjct: 542 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRS---- 596
Query: 660 AWWALPTST*AASTTCPCARCPGRAVSSGDRSSTSTTLTSAPSAAPTWSRSWSACGSRTP 839
PT + S T P R R+ + R S + + S + + +R SRTP
Sbjct: 597 ---RTPTRRRSRSRT-PARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 652
Query: 840 ------RVRSPTCRGCAPPTTCGLAACPALATPCTRS---AWSGRPCSRPPSCTRSR 983
R R+P RG + T PA + +RS A GR SR P RSR
Sbjct: 653 ARRGRSRSRTPARRGRSRSRT------PARRSGRSRSRTPARRGRSRSRTPRRGRSR 703
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 58.9 bits (141), Expect = 1e-07
Identities = 88/311 (28%), Positives = 122/311 (38%), Gaps = 20/311 (6%)
Frame = -2
Query: 965 RWAGTWAAAPRAPRAGRGQR-----WAGGQSTRSRGRAATARRGSNPGCSAPT--RAPAS 807
R A W + R GR + W+ ++T+ RGR+ +ARRG + S T R+ +
Sbjct: 307 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 366
Query: 806 APGRRGARGRCQCCRCRRSIAR-------RNGATRASGAGAGRTCRSRRSRQRPPGRLGT 648
P RRG R R + RRS +R R+ G RT RRSR R P R +
Sbjct: 367 TPARRG-RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRS 425
Query: 647 GTSKPGR*RCGTVESS*ASRRR**ASRCPQGAQIGKRRPP--RPGHSSSPWPSPSSWPPR 474
+ P R R G S +RR SR P + R P R G S S P+
Sbjct: 426 RSRSPAR-RSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRS 484
Query: 473 TASGTGRPRRWT*TSPGRCNQPSYRHSPQCHHPGQPR*GSSARPGGQQLQRAWACDPRGT 294
GR R + GR S+ +PQ + R GSS+ + R R
Sbjct: 485 RTPRRGRSRSRSLVRRGR----SHSRTPQ----RRGRSGSSSE--RKNKSRTSQRRSRSN 534
Query: 293 ATGKHHRQRPGARR----SSPGEQRDHRPSCCRTTYGAERSGHPSCC*A*ASPGRSSSWC 126
++ + + R +RR SSP + R S R+ G+ +P R S
Sbjct: 535 SSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKS----QTPPRRSRSG 590
Query: 125 SSQAGRHDPTP 93
SSQ TP
Sbjct: 591 SSQPKAKSRTP 601
Score = 57.4 bits (137), Expect = 4e-07
Identities = 93/322 (28%), Positives = 128/322 (38%), Gaps = 41/322 (12%)
Frame = -2
Query: 935 RAPRAGRGQRWAGGQSTRSRGRAAT-ARRG-SNPGCSAPTRAPASAPGRRGARGRCQCCR 762
R+ A RG+ + +TR R R+ T ARRG S A R+ + P RR +R R R
Sbjct: 343 RSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARR 402
Query: 761 CR---RSIARRNGATRA--------------SGAGAGRT-CRSRRSRQRPPGRLGTGTSK 636
R R+ ARR TR+ SG RT R RSR R P R G S+
Sbjct: 403 GRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSR 462
Query: 635 PGR*RCGTVESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWP-----SPSSWPPRT 471
R G S +RR SR P+ + R R G S S P S SS +
Sbjct: 463 TPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKN 522
Query: 470 ASGTGRPRRWT*TSPG-RCNQPSYRHSPQCHHP----------GQPR*GSSARPGGQ--- 333
S T + R + +SP + ++ S R S P + GSS P +
Sbjct: 523 KSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT 582
Query: 332 --QLQRAWACDPRGTATGKHHRQRPGARRSSPGEQRDHRPSCCRTTYGAERSGHPSCC*A 159
+ R+ + P+ + R R + S P +Q+ PS R ++ + S HP
Sbjct: 583 PPRRSRSGSSQPKAKSRTPPRRSRSSS--SPPPKQKSKTPS--RQSHSSS-SPHPKV--K 635
Query: 158 *ASPGRSSSWCSSQAGRHDPTP 93
+P R S S QA TP
Sbjct: 636 SGTPPRQGSITSPQANEQSVTP 657
Score = 52.8 bits (125), Expect = 9e-06
Identities = 71/258 (27%), Positives = 95/258 (36%), Gaps = 16/258 (6%)
Frame = -2
Query: 941 APRAPRAGRGQRWAGGQSTRSRGRAATARRGSNPGCSAPTRAPASAPGRRGARGRCQC-- 768
+P+ R+ QRW +S + RGR+ + +R PG S R RGR
Sbjct: 300 SPQWRRSRSAQRWGRSRSPQRRGRSRSPQR---PGWSRSRNTQRRGRSRSARRGRSHSRS 356
Query: 767 ----CRCRRSIARRNGATR----ASGAGAGRTCRSRRSRQRPPGRLGTGTSK-PGR*RCG 615
R R R G +R A RT RRSR R P R G S+ P R R
Sbjct: 357 PATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR 416
Query: 614 TVESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWP-----SPSSWPPRTASGTGRP 450
T S RR S + + R P R G S S P S S P R +GR
Sbjct: 417 T--RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARR---SGRS 471
Query: 449 RRWT*TSPGRCNQPSYRHSPQCHHPGQPR*GSSARPGGQQLQRAWACDPRGTATGKHHRQ 270
R T GR + R G+ R S R G + G+++ + ++
Sbjct: 472 RSRTPARRGRSRSRTPRR-------GRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKS 524
Query: 269 RPGARRSSPGEQRDHRPS 216
R RRS + + S
Sbjct: 525 RTSQRRSRSNSSPEMKKS 542
Score = 42.0 bits (97), Expect = 0.016
Identities = 52/209 (24%), Positives = 73/209 (34%), Gaps = 10/209 (4%)
Frame = -2
Query: 938 PRAPRAGRGQRWAGGQSTRSRGRAATARRGSNPGCSAPTRAPASAPGRRGARGRCQCCRC 759
PR R+G S++ + ++ T R S S P + + P R+ +
Sbjct: 584 PRRSRSG---------SSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKV 634
Query: 758 RRSIARRNGATRASGAGAGRTCRSRRS----------RQRPPGRLGTGTSKPGR*RCGTV 609
+ R G+ + A RRS + R P R S P R V
Sbjct: 635 KSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPR-----V 689
Query: 608 ESS*ASRRR**ASRCPQGAQIGKRRPPRPGHSSSPWPSPSSWPPRTASGTGRPRRWT*TS 429
+SS R+ S PQ P + HS S PSPS RT PRR S
Sbjct: 690 KSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTT-----PRRSRSVS 744
Query: 428 PGRCNQPSYRHSPQCHHPGQPR*GSSARP 342
P C+ R P+ H G + +P
Sbjct: 745 P--CSNVESRLLPRYSHSGSSSPDTKVKP 771
Score = 34.3 bits (77), Expect = 3.4
Identities = 52/177 (29%), Positives = 70/177 (39%), Gaps = 9/177 (5%)
Frame = +3
Query: 480 WPRRRRRPRAGRMSRSWRPTLANLRPLRAPRRSSPSPTRSR*FHRSTTSSTRLARTCPKT 659
W R R R GR + R + P R S +P R R RS T + R +R+
Sbjct: 332 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRS---- 386
Query: 660 AWWALPTST*AASTTCPCARCPGRAVSSGDRSSTSTTLTSAPSAAPTWSRSWSACGSRTP 839
PT + S T P R R+ + R S + + S + + +R SRTP
Sbjct: 387 ---RTPTRRRSRSRT-PARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTP 442
Query: 840 ------RVRSPTCRGCAPPTTCGLAACPALATPCTRS---AWSGRPCSRPPSCTRSR 983
R R+P RG + T PA + +RS A GR SR P RSR
Sbjct: 443 ARRGRSRSRTPARRGRSRSRT------PARRSGRSRSRTPARRGRSRSRTPRRGRSR 493
