KCC002350A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002350A_C01 KCC002350A_c01
aagctactttGCTTTCAGTCTGCTGCACCCCTGACTTACGAGTTCTCACGACAGCGCTGG
GATCCTCGCCCCGACGACGCACCTTTGACCGCAACTTGAGGCCCTGCTGATCGTTTAACA
CACACGGCCAGCAGGGCCGATAGGAGACGGCCTATAGGGCCTCGTTGTGAGCCGAGCCGG
CTCATCTCGCGCGCCCGCCGGGCTTTTATAGTAACAGACAGCTGCCATGAGGATTATGAT
CAAGGGCGGTGTTTGGAAAAACACCGAGGATGAAATCCTCAAGGCGGCAGTGATGAAGTA
TGGGCTCAACCAGTGGGCCCGTATTTCGTCGCTGCTGGTGCGGAAGTCTGCCAAGCAGTG
CAAAGCACGCTGGTACGAGTGGCTGGACCCGGCCATCAAGAAGACGGAGTGGACGCGCGA
GGAGGATGAGAAGCTGCTGCATCTGGCAAAGCTGATGCCGTGCCAGTGGCGCACCATCGC
GCCCATCGTGGGCCGCACGCCCGCGCAGTGCCTGGACCGATACGAGCGTCTGCTGGACCA
GGCCGTCGCCAAGGACGTCAACTACGATCCGCGTGATGACCCGCGGCGGCTGCGGCCGGG
TGAGATTGACCCCAACCCCGAGGCCAAGCCCGCGCGCCCCGACGCGGTGGACATGGACGA
GGACGAGAAGGAGATGCTCAGCGAGGCACGCGCGCGTCTGGccaacacacgtggtaagaa
ggccaagcgcaaggctcgtgaaaagcagctggaggaggcgcggcgcttggcgcagctgca
g


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002350A_C01 KCC002350A_c01
         (781 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL59389.1|AF458962_1 CDC5 protein [Zea mays]                      348  4e-95
dbj|BAA09598.1| Myb-like DNA binding protein [Arabidopsis thaliana]   348  5e-95
ref|NP_172448.1| myb family transcription factor [Arabidopsis th...   348  5e-95
emb|CAD40338.1| OSJNBa0020I02.21 [Oryza sativa (japonica cultiva...   340  1e-92
ref|XP_311945.1| ENSANGP00000011065 [Anopheles gambiae] gi|21295...   320  2e-86

>gb|AAL59389.1|AF458962_1 CDC5 protein [Zea mays]
          Length = 925

 Score =  348 bits (894), Expect = 4e-95
 Identities = 169/185 (91%), Positives = 176/185 (94%)
 Frame = +2

Query: 227 MRIMIKGGVWKNTEDEILKAAVMKYGLNQWARISSLLVRKSAKQCKARWYEWLDPAIKKT 406
           MRIMIKGGVWKNTEDEILKAAVMKYG NQWARISSLLVRKSAKQCKARWYEWLDP+IKKT
Sbjct: 1   MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60

Query: 407 EWTREEDEKLLHLAKLMPCQWRTIAPIVGRTPAQCLDRYERLLDQAVAKDVNYDPRDDPR 586
           EWTREEDEKLLHLAKLMP QWRTIAPIVGRTP+QCL+RYE+LLD A AKD NY+  DDPR
Sbjct: 61  EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEANDDPR 120

Query: 587 RLRPGEIDPNPEAKPARPDAVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 766
           +LRPGEIDPNPE+KPARPD VDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
Sbjct: 121 KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 180

Query: 767 LAQLQ 781
           LA LQ
Sbjct: 181 LASLQ 185

>dbj|BAA09598.1| Myb-like DNA binding protein [Arabidopsis thaliana]
          Length = 844

 Score =  348 bits (893), Expect = 5e-95
 Identities = 169/185 (91%), Positives = 175/185 (94%)
 Frame = +2

Query: 227 MRIMIKGGVWKNTEDEILKAAVMKYGLNQWARISSLLVRKSAKQCKARWYEWLDPAIKKT 406
           MRIMIKGGVWKNTEDEILKAAVMKYG NQWARISSLLVRKSAKQCKARWYEWLDP+IKKT
Sbjct: 1   MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60

Query: 407 EWTREEDEKLLHLAKLMPCQWRTIAPIVGRTPAQCLDRYERLLDQAVAKDVNYDPRDDPR 586
           EWTREEDEKLLHLAKL+P QWRTIAPIVGRTP+QCL+RYE+LLD A  KD NYD  DDPR
Sbjct: 61  EWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPR 120

Query: 587 RLRPGEIDPNPEAKPARPDAVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 766
           +LRPGEIDPNPEAKPARPD VDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
Sbjct: 121 KLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 180

Query: 767 LAQLQ 781
           LA LQ
Sbjct: 181 LASLQ 185

>ref|NP_172448.1| myb family transcription factor [Arabidopsis thaliana]
           gi|25294081|pir||F86231 hypothetical protein [imported]
           - Arabidopsis thaliana gi|2160167|gb|AAB60730.1|
           Identical to A. thaliana Myb-like protein (gb|D58424).
           [Arabidopsis thaliana] gi|20260316|gb|AAM13056.1|
           putative Myb DNA-binding protein [Arabidopsis thaliana]
           gi|31711768|gb|AAP68240.1| At1g09770 [Arabidopsis
           thaliana]
          Length = 844

 Score =  348 bits (893), Expect = 5e-95
 Identities = 169/185 (91%), Positives = 175/185 (94%)
 Frame = +2

Query: 227 MRIMIKGGVWKNTEDEILKAAVMKYGLNQWARISSLLVRKSAKQCKARWYEWLDPAIKKT 406
           MRIMIKGGVWKNTEDEILKAAVMKYG NQWARISSLLVRKSAKQCKARWYEWLDP+IKKT
Sbjct: 1   MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT 60

Query: 407 EWTREEDEKLLHLAKLMPCQWRTIAPIVGRTPAQCLDRYERLLDQAVAKDVNYDPRDDPR 586
           EWTREEDEKLLHLAKL+P QWRTIAPIVGRTP+QCL+RYE+LLD A  KD NYD  DDPR
Sbjct: 61  EWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPR 120

Query: 587 RLRPGEIDPNPEAKPARPDAVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 766
           +LRPGEIDPNPEAKPARPD VDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
Sbjct: 121 KLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR 180

Query: 767 LAQLQ 781
           LA LQ
Sbjct: 181 LASLQ 185

>emb|CAD40338.1| OSJNBa0020I02.21 [Oryza sativa (japonica cultivar-group)]
          Length = 1004

 Score =  340 bits (872), Expect = 1e-92
 Identities = 170/204 (83%), Positives = 177/204 (86%), Gaps = 19/204 (9%)
 Frame = +2

Query: 227 MRIMIKGGVWKNTEDEILKAAVMKYGLNQWARISSLLVRKSAKQCKARWYEWLDPAIKK- 403
           MRIMIKGGVWKNTEDEILKAAVMKYG NQWARISSLLVRKSAKQCKARWYEWLDP+IKK 
Sbjct: 1   MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKL 60

Query: 404 ------------------TEWTREEDEKLLHLAKLMPCQWRTIAPIVGRTPAQCLDRYER 529
                             TEWTREEDEKLLHLAKLMP QWRTIAPIVGRTP+QCL+RYE+
Sbjct: 61  CSPHAILLQAYTAFEGLMTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEK 120

Query: 530 LLDQAVAKDVNYDPRDDPRRLRPGEIDPNPEAKPARPDAVDMDEDEKEMLSEARARLANT 709
           LLD A AKD NY+P DDPR+LRPGEIDPNPE+KPARPD VDMDEDEKEMLSEARARLANT
Sbjct: 121 LLDAACAKDENYEPNDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANT 180

Query: 710 RGKKAKRKAREKQLEEARRLAQLQ 781
           RGKKAKRKAREKQLEEARRLA LQ
Sbjct: 181 RGKKAKRKAREKQLEEARRLASLQ 204

>ref|XP_311945.1| ENSANGP00000011065 [Anopheles gambiae] gi|21295971|gb|EAA08116.1|
           ENSANGP00000011065 [Anopheles gambiae str. PEST]
          Length = 943

 Score =  320 bits (820), Expect = 2e-86
 Identities = 156/184 (84%), Positives = 167/184 (89%)
 Frame = +2

Query: 230 RIMIKGGVWKNTEDEILKAAVMKYGLNQWARISSLLVRKSAKQCKARWYEWLDPAIKKTE 409
           RIMIKGGVW+NTEDEILKAAVMKYG NQW+RI+SLL RKSAKQCKARWYEWLDP+IKKTE
Sbjct: 14  RIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTE 73

Query: 410 WTREEDEKLLHLAKLMPCQWRTIAPIVGRTPAQCLDRYERLLDQAVAKDVNYDPRDDPRR 589
           W+REEDEKLLHLAKLMP QWRTIAPI+GRT AQCL+RYE LLDQA  K+   D  DDPR+
Sbjct: 74  WSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEYLLDQAQRKEEGEDGMDDPRK 133

Query: 590 LRPGEIDPNPEAKPARPDAVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRL 769
           L+PGEIDPNPE KPARPD  DMDEDE EMLSEARARLANT+GKKAKRKAREKQLEEARRL
Sbjct: 134 LKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRL 193

Query: 770 AQLQ 781
           A LQ
Sbjct: 194 AALQ 197



EST assemble image


clone accession position
1 LCL017c06_r AV626882 1 279
2 HCL074f10_r AV643716 11 498
3 HCL083c04_r AV644169 16 291
4 HCL046d01_r AV642145 16 507
5 LCL085b02_r AV630846 18 342
6 HCL024g05_r AV640922 18 508
7 LCL016c05_r AV626834 26 483
8 HCL020g02_r AV640689 117 381
9 HCL038e03_r AV641673 298 781




Chlamydomonas reinhardtii
Kazusa DNA Research Institute