KCC002345A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002345A_C01 KCC002345A_c01
gtagagtaaTTCACACATGTGTGCAACCGACTGCAGTTCTGAATTTCTTACCCACTTCAT
TTTTGACTAGGCGACCAGCTTGACACCTGCGGCTGGCGCAATCCTGCACAACAAGATGAA
CATGTTGCACTTCACAACTGCGCCCTGCCAGTAGTAACAGTCTTGCGGGCTTCCTCTGAA
CGCCCTCGCAAGCCCCGCTCGTGAACCAGTACCGGCGTCGCCATGGCTACCTGTAACGCA
TTATAGTCGTTTCTTGTTTGAGACAAAGGGGAGTGGAGAGGAGCGAGGGAGTGCGCACAT
CGGTCTTGCTCTGAAATACAAGTCGTCAAAACCATGGCAGCACAGGTTTCAGACGGACTG
CTGTACTCCTTTACGCCAGGCACTCCTCCGAGTGCCACCTCTGGTTCTCCGCTCGTTAGT
CCACGCCGGCTGCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002345A_C01 KCC002345A_c01
         (436 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00074106.1| COG3772: Phage-related lysozyme (muraminidase...    33  0.90
dbj|BAB89592.1| P0446G04.15 [Oryza sativa (japonica cultivar-gro...    32  2.0
dbj|BAC86622.1| unnamed protein product [Homo sapiens]                 32  2.6
gb|AAD42044.1|AF097183_1 unknown [Cryptosporidium parvum]              31  3.4
ref|XP_099029.1| testis-specific transcript, Y-linked 2 [Homo sa...    30  5.8

>ref|ZP_00074106.1| COG3772: Phage-related lysozyme (muraminidase) [Trichodesmium
           erythraeum IMS101]
          Length = 414

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 20/59 (33%), Positives = 29/59 (48%)
 Frame = +2

Query: 203 EPVPASPWLPVTHYSRFLFETKGSGEERGSAHIGLALKYKSSKPWQHRFQTDCCTPLRQ 379
           +P+P  P LP T    +L  TK S ++R   ++ L L Y  S   + R +  C  P RQ
Sbjct: 239 DPLPKPPVLPPTSKKNYLLLTKTSRKDRYGCYV-LHLDYFKSGKLEDRLEVCCGAPGRQ 296

>dbj|BAB89592.1| P0446G04.15 [Oryza sativa (japonica cultivar-group)]
          Length = 189

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 345 LCCHGFD----DLYFRARPMCALPRSSPLPFVSNKK 250
           LC HGF     D + R+RP C L RSS LP  +  K
Sbjct: 145 LCGHGFHPECVDAWLRSRPSCPLCRSSLLPAAATTK 180

>dbj|BAC86622.1| unnamed protein product [Homo sapiens]
          Length = 205

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/46 (39%), Positives = 23/46 (49%)
 Frame = +2

Query: 80  LTPAAGAILHNKMNMLHFTTAPCQ**QSCGLPLNALASPAREPVPA 217
           L P   ++LH+  + LH  T P    Q C  PL AL  P  +P PA
Sbjct: 58  LPPCPASLLHSPFHALHLPTLP----QGCPFPLPALYPP--QPFPA 97

>gb|AAD42044.1|AF097183_1 unknown [Cryptosporidium parvum]
          Length = 984

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = -1

Query: 190 CEGVQRKPARLLLLAGRSCEVQHVHLVVQDCASRRCQAGRLVKNEVGKKFRTAVGCTH 17
           C G    PAR+    G  C V+H  L    CA   C  G  VK E  K    A  C+H
Sbjct: 536 CTGGSCSPARV---RGARC-VKHEILPNHHCAKEECSKGECVKGECKKGKCVAGDCSH 589

>ref|XP_099029.1| testis-specific transcript, Y-linked 2 [Homo sapiens]
           gi|18543678|ref|XP_099030.1| hypothetical protein
           XP_099030 [Homo sapiens]
          Length = 143

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 170 LPLNALASPAREPVPASPWLPVTHYSRFLFETKGSGEERGSAHIGLALKYKSSKPWQHR 346
           +P + + S   + +  SPW  +  +S F   ++ S  +R     G A  +  S+PW HR
Sbjct: 20  IPSHKIPSTTHQTIFQSPWNLILAHSLFQEWSQKSSLQR-PPQFGKASSFSGSQPWSHR 77



EST assemble image


clone accession position
1 HCL020a05_r AV640657 1 206
2 LCL050c07_r AV629007 10 436




Chlamydomonas reinhardtii
Kazusa DNA Research Institute