Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002339A_C01 KCC002339A_c01
(355 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O75417|DPOQ_HUMAN DNA polymerase theta (DNA polymerase eta) g... 40 0.008
ref|NP_006587.2| polymerase (DNA directed), theta; polymerase (D... 40 0.008
ref|XP_221423.2| similar to DNA polymerase theta short isoform [... 39 0.019
gb|AAD05272.1| DNA polymerase eta [Homo sapiens] 39 0.024
dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultiva... 37 0.054
>sp|O75417|DPOQ_HUMAN DNA polymerase theta (DNA polymerase eta) gi|3510695|gb|AAC33565.1|
DNA polymerase theta [Homo sapiens]
Length = 1762
Score = 40.0 bits (92), Expect = 0.008
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +2
Query: 38 KGSAAEIVELCTYLRRAALSTDHACFYAHAHAQGLSQAARAGLPAPR 178
+GSAA+IV++ T + L T H+ F +H H +G+ Q+ R GL R
Sbjct: 1646 QGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKR 1692
>ref|NP_006587.2| polymerase (DNA directed), theta; polymerase (DNA-directed), theta
[Homo sapiens] gi|13892061|gb|AAK39635.1| DNA polymerase
theta [Homo sapiens]
Length = 2724
Score = 40.0 bits (92), Expect = 0.008
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +2
Query: 38 KGSAAEIVELCTYLRRAALSTDHACFYAHAHAQGLSQAARAGLPAPR 178
+GSAA+IV++ T + L T H+ F +H H +G+ Q+ R GL R
Sbjct: 2608 QGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKR 2654
>ref|XP_221423.2| similar to DNA polymerase theta short isoform [Rattus norvegicus]
Length = 2778
Score = 38.9 bits (89), Expect = 0.019
Identities = 22/59 (37%), Positives = 32/59 (53%), Gaps = 1/59 (1%)
Frame = +2
Query: 38 KGSAAEIVELCTYLRRAALSTDHACFYAHAHAQGLSQAARAG-LPAPRAKASAVASRSG 211
+GSAA+IV++ T + L T H F +H H + + Q+ RAG LP + K R G
Sbjct: 2662 QGSAADIVKVATVNIQKQLETFHPTFKSHGHRESMLQSDRAGLLPKRKVKGMFCPMRGG 2720
>gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
Length = 1154
Score = 38.5 bits (88), Expect = 0.024
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 38 KGSAAEIVELCTYLRRAALSTDHACFYAHAHAQGLSQAARAGLPAPR 178
+GSAA+IV++ T + L T H+ F +H H +G+ Q+ + GL R
Sbjct: 1040 QGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKR 1086
>dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultivar-group)]
Length = 293
Score = 37.4 bits (85), Expect = 0.054
Identities = 29/67 (43%), Positives = 36/67 (53%)
Frame = +2
Query: 74 YLRRAALSTDHACFYAHAHAQGLSQAARAGLPAPRAKASAVASRSGRSCKRPGWPAPCCV 253
Y R AA + A + H H LS A AG+PAP AS VA+ +G+ KRP PA
Sbjct: 5 YWRYAAAAD--AARHHHHHQLPLSAAPAAGMPAPPPAASQVAA-AGQPLKRPR-PADFSD 60
Query: 254 VAASPEM 274
V +PEM
Sbjct: 61 VPGAPEM 67
