KCC002335A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002335A_C01 KCC002335A_c01
cacCTCATTAATCCTTAGTTGTGCATCCAAGTATTTATAAGCTGGACGGATTCGCTGCTG
TGACCAAGCCAAGCTTTCTCTCTTTCGCCGTGACGCCCTGTTAGTATTCCTTCAACCAGA
GTCTCTTGCCTTGGGTTAACTCTTTCTGAGCGCGCTAGCAGCGCGCGGCCAGGGTAGTCA
GCGAGCAACCGGTCGTCGACAACTTGGGCTGACGCGTCCGGCAGTCGCCCCGCGGAGCGT
GCCTTGCCAAAATGACTGCGCCAGCCAGCGGCGCGGGCTCAGGGGGCCTCAGCTTTGATG
ATGCACTAAGTCGCTACGTTGGCGAGTTCGGGAGAGCTCAGATTCGCCTGCACTGCATTG
CATCCATCTTCTGGATTGGCAACGCCCTGCTCATCTTGCTCATGGTCTTCCACGTCTCGC
CCTCGCCCATCAAGATGCACTGGTGGGCCTGCAGCGACCCCGCCGACGAGCACTGCGCGG
CGGTGTTCGCACTCGCCGACCCCAGCAAGGAGTTCTGCACCCTCTCCCGCGACGCCTGGT
CCTGGACGCACTCGCGCTGGTCCGTAATCAGCCAGTTCAACCTGGTGTGTGGGTCGGCCT
GGAAGAGCCAGCTGGCCAACGCGGGCTTCTTCATGGGCTATCTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002335A_C01 KCC002335A_c01
         (644 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE04693.1| OSJNBb0015D13.11 [Oryza sativa (japonica cultiva...    58  1e-07
ref|NP_188702.1| organic cation transporter family [Arabidopsis ...    57  3e-07
dbj|BAB02242.1| organic anion transporter-like protein [Arabidop...    57  3e-07
ref|NP_178054.1| transporter - related [Arabidopsis thaliana] gi...    53  4e-06
ref|NP_173089.1| transporter - related [Arabidopsis thaliana] gi...    52  1e-05

>emb|CAE04693.1| OSJNBb0015D13.11 [Oryza sativa (japonica cultivar-group)]
          Length = 498

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 43/135 (31%), Positives = 60/135 (43%), Gaps = 6/135 (4%)
 Frame = +3

Query: 252 MTAPASGAGSGG-----LSFDDALSRYVGEFGRAQIRLHCIASIFWIGNALLILLMVFHV 416
           + A   G G GG     +S DDAL+ + GEFGR Q+R   + S  W+  AL  ++++F  
Sbjct: 6   LLAGGGGGGGGGEVKRRVSIDDALAWHAGEFGRWQLRHFVLVSSAWLLEALHTMVIIF-- 63

Query: 417 SPSPIKMHWWACSDPADEHCAAVFALADPSKEFCTLSRDAWSWTHSR-WSVISQFNLVCG 593
           +     M   A      + CA   A A             W W   R  S +S++ LVCG
Sbjct: 64  ADREPAMVCAAGDGRCGDRCAGAGAAAG----------TGWEWASGRASSTVSEWGLVCG 113

Query: 594 SAWKSQLANAGFFMG 638
             +K  L  A FF G
Sbjct: 114 ERYKVGLVQAIFFAG 128

>ref|NP_188702.1| organic cation transporter family [Arabidopsis thaliana]
          Length = 534

 Score = 56.6 bits (135), Expect = 3e-07
 Identities = 41/137 (29%), Positives = 59/137 (42%), Gaps = 1/137 (0%)
 Frame = +3

Query: 231 RGACLAKMTAPASGAGSGGLSFDDALSRYVGEFGRAQIRLHCIASIFWIGNALLILLMVF 410
           R   L K+       G   L  D+ L RY GEFGR Q++   +  I W   A   ++M+F
Sbjct: 13  RQPLLEKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAWALEAFHTMVMIF 72

Query: 411 HVSPSPIKMHWWACSDPADEHCAAVFALADPSKEFCTLSRDAWSWTHSRW-SVISQFNLV 587
                P     W C   +D    ++    DPS         +W WT  +  S +S++ L+
Sbjct: 73  -ADQEP----EWRCVG-SDCRVGSLNCELDPS---------SWEWTAGKGSSTVSEWGLI 117

Query: 588 CGSAWKSQLANAGFFMG 638
           CG  +K  L  A FF G
Sbjct: 118 CGDKYKVGLVQALFFAG 134

>dbj|BAB02242.1| organic anion transporter-like protein [Arabidopsis thaliana]
          Length = 526

 Score = 56.6 bits (135), Expect = 3e-07
 Identities = 41/137 (29%), Positives = 59/137 (42%), Gaps = 1/137 (0%)
 Frame = +3

Query: 231 RGACLAKMTAPASGAGSGGLSFDDALSRYVGEFGRAQIRLHCIASIFWIGNALLILLMVF 410
           R   L K+       G   L  D+ L RY GEFGR Q++   +  I W   A   ++M+F
Sbjct: 13  RQPLLEKIPVKKEAEGEERLCIDEMLQRYCGEFGRWQLKHFVLTCIAWALEAFHTMVMIF 72

Query: 411 HVSPSPIKMHWWACSDPADEHCAAVFALADPSKEFCTLSRDAWSWTHSRW-SVISQFNLV 587
                P     W C   +D    ++    DPS         +W WT  +  S +S++ L+
Sbjct: 73  -ADQEP----EWRCVG-SDCRVGSLNCELDPS---------SWEWTAGKGSSTVSEWGLI 117

Query: 588 CGSAWKSQLANAGFFMG 638
           CG  +K  L  A FF G
Sbjct: 118 CGDKYKVGLVQALFFAG 134

>ref|NP_178054.1| transporter - related [Arabidopsis thaliana] gi|7488397|pir||T01019
           transport protein homolog YUP8H12R.2 - Arabidopsis
           thaliana gi|3152576|gb|AAC17057.1| Similar to
           liver-specific transport protein gb|L27651 from Rattus
           norviegicus. [Arabidopsis thaliana]
          Length = 527

 Score = 52.8 bits (125), Expect = 4e-06
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 3/137 (2%)
 Frame = +3

Query: 243 LAKMTAP--ASGAGSGGLSFDDALSRYVGEFGRAQIRLHCIASIFWIGNALLILLMVFHV 416
           +A+ T P       S   S DD +  Y+G FG AQ     + S   + +A    + VF  
Sbjct: 1   MAEPTQPLLTDSNSSSPRSLDDTIESYIGSFGWAQFLQAALVSFSGVFDAQQTFISVFTD 60

Query: 417 SPSPIKMHWWACSDPADEHCAAVFALADPSKEFCTLSRDAWSWTHS-RWSVISQFNLVCG 593
           S        W C+D ++  C       +     C L + AWSW +S   SVIS++ L C 
Sbjct: 61  SEPT-----WHCTD-SNSIC------HESISNICILPKTAWSWDYSPHVSVISEWGLQCA 108

Query: 594 SAWKSQLANAGFFMGYL 644
            ++   L  + FF+G L
Sbjct: 109 GSFVKGLPESSFFVGCL 125

>ref|NP_173089.1| transporter - related [Arabidopsis thaliana]
           gi|25518359|pir||B86299 hypothetical protein F3O9.19 -
           Arabidopsis thaliana
           gi|4966360|gb|AAD34691.1|AC006341_19 Is a member of the
           PF|00083 sugar transporter family. [Arabidopsis
           thaliana] gi|18958009|gb|AAL79578.1| At1g16390/F3O9_19
           [Arabidopsis thaliana] gi|23507793|gb|AAN38700.1|
           At1g16390/F3O9_19 [Arabidopsis thaliana]
          Length = 518

 Score = 51.6 bits (122), Expect = 1e-05
 Identities = 35/121 (28%), Positives = 51/121 (41%), Gaps = 3/121 (2%)
 Frame = +3

Query: 291 SFDDALSRYVGEFGRAQIRLHCIASIFWIGNALLILLMVFHVSPSPIKMHWWAC--SDPA 464
           S ++ + R +G+FG AQ     + S  W  +A    + VF  S        W C  SD  
Sbjct: 24  SLEETIERCIGDFGWAQFLQAALVSFAWFFDAQQTFITVFTDSQP-----MWHCDNSDRV 78

Query: 465 DEHCAAVFALADPSKEFCTLSRDAWSW-THSRWSVISQFNLVCGSAWKSQLANAGFFMGY 641
           D  C         S   CTL    WSW  +   S+IS++ L C  ++      + FF+G 
Sbjct: 79  DSVCNT------SSSNLCTLPNQTWSWDLNPHVSIISEWGLQCAGSFLKGFPASSFFLGC 132

Query: 642 L 644
           L
Sbjct: 133 L 133



EST assemble image


clone accession position
1 HCL060c01_r AV642903 1 479
2 HCL056g07_r AV642727 4 504
3 MXL097a08_r BP098658 20 379
4 HCL018f04_r AV640580 35 558
5 MXL083c08_r BP097906 182 644




Chlamydomonas reinhardtii
Kazusa DNA Research Institute