Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002333A_C01 KCC002333A_c01
(542 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33093.1| histidine-rich glycoprotein 2 [Rattus norvegicus] 46 3e-04
ref|NP_596919.1| histidine-rich glycoprotein [Rattus norvegicus]... 46 4e-04
gb|AAG28417.1|AF194029_1 histidine-rich glycoprotein [Rattus nor... 45 5e-04
ref|XP_282973.1| hypothetical protein XP_282973 [Mus musculus] g... 39 0.034
ref|NP_619578.1| coat protein [Elm mottle virus] gi|2149397|gb|A... 37 0.17
>dbj|BAB33093.1| histidine-rich glycoprotein 2 [Rattus norvegicus]
Length = 515
Score = 46.2 bits (108), Expect = 3e-04
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Frame = +3
Query: 285 GTAREHRTVAVPSSRSCRPQPCAAQHEPREAPDAQEPAREAR*GV*HEHLSYG-WCGGHH 461
GT R HR P + SC PC QH P Q P H H +G GHH
Sbjct: 320 GTNRSHRP---PHNHSCNEHPCHGQHPHGHHPHGQHP---------HGHHPHGQHPHGHH 367
Query: 462 AQGVAGYPDHNSGRHPRRDYPEVEQSH 542
G + H G HP D+P H
Sbjct: 368 PHGHHLHRHHPHGHHPHGDHPHGHHPH 394
>ref|NP_596919.1| histidine-rich glycoprotein [Rattus norvegicus]
gi|34869101|ref|XP_346420.1| histidine-rich glycoprotein
[Rattus norvegicus] gi|13358876|dbj|BAB33092.1|
histidine-rich glycoprotein 1 [Rattus norvegicus]
Length = 525
Score = 45.8 bits (107), Expect = 4e-04
Identities = 30/88 (34%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +3
Query: 285 GTAREHRTVAVPSSRSCRPQPCAAQHEPREAPDAQEPAREAR*GV*-HEHLSYGWCG-GH 458
GT R HR P + SC PC QH P Q P G H H +G GH
Sbjct: 320 GTNRSHRP---PHNHSCNEHPCHGQHPHGHHPHGQHPHGHHPHGQHPHGHHPHGQHPHGH 376
Query: 459 HAQGVAGYPDHNSGRHPRRDYPEVEQSH 542
H G + H G HP D+P H
Sbjct: 377 HPHGQHPHGHHPHGHHPHGDHPHGHHPH 404
>gb|AAG28417.1|AF194029_1 histidine-rich glycoprotein [Rattus norvegicus]
Length = 510
Score = 45.4 bits (106), Expect = 5e-04
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Frame = +3
Query: 285 GTAREHRTVAVPSSRSCRPQPCAAQHEPREAPDAQEPAREAR*GV*HEHLSYG-WCGGHH 461
GT R HR P + SC PC QH P Q P H H +G GHH
Sbjct: 320 GTNRSHRP---PRNHSCNEHPCHRQHPHGHHPHGQHP---------HGHHPHGQHPRGHH 367
Query: 462 AQGVAGYPDHNSGRHPRRDYPEVEQSH 542
G H G HP D+P H
Sbjct: 368 PHGQHPRGHHPHGHHPHGDHPHGHHPH 394
>ref|XP_282973.1| hypothetical protein XP_282973 [Mus musculus]
gi|26338195|dbj|BAC32783.1| unnamed protein product [Mus
musculus]
Length = 140
Score = 39.3 bits (90), Expect = 0.034
Identities = 36/129 (27%), Positives = 55/129 (41%)
Frame = +1
Query: 100 RFRRRDQMAFSLLTSSRAAQQAASVRGKASRRQAQPAAPAPANAATASCSGRVEPVHPAG 279
R RRR A +++ A Q S G+ R P PAPA + +S S +P H
Sbjct: 2 RRRRRSMTALCRGSANSAMGQVGSTMGRG-RHWPGPGLPAPAATSGSSASDGPDPPHARA 60
Query: 280 LWGRRASIERSRYLLRVAADPSLAQPSTSLEKHQMHKNQPEKHDEVYDMSTCPMGGVEAI 459
+ GR ++ER+R RV P A + Q +++P + S CP+ +
Sbjct: 61 MSGR--AVERARARRRVFLRPRSA-------RFQAGEHRPPQ------ASACPLYPCPIV 105
Query: 460 MRKESQGIL 486
R + IL
Sbjct: 106 FRAAAAAIL 114
>ref|NP_619578.1| coat protein [Elm mottle virus] gi|2149397|gb|AAB97781.1| coat
protein [elm mottle virus]
gi|9622471|gb|AAF89808.1|AF172965_2 coat protein
[hydrangea mosaic virus]
Length = 213
Score = 37.0 bits (84), Expect = 0.17
Identities = 19/45 (42%), Positives = 27/45 (59%)
Frame = +1
Query: 214 PAPANAATASCSGRVEPVHPAGLWGRRASIERSRYLLRVAADPSL 348
PAP NA T S GR +P + W ++AS+ RS+ L V + P+L
Sbjct: 15 PAPNNAPTGSRGGRRQPTARSRQWAQQASVRRSQPPLSVNSVPAL 59
