Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002324A_C01 KCC002324A_c01
(461 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T43847 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 210 7e-54
pir||T43832 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 202 1e-51
sp|Q42877|RPB2_LYCES DNA-directed RNA polymerase II 135 kDa poly... 202 1e-51
pir||T43842 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 201 4e-51
pir||T43837 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 200 7e-51
>pir||T43847 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - liverwort (Marchantia polymorpha)
(fragment) gi|2736127|gb|AAB94064.1| RPB140 [Marchantia
polymorpha]
Length = 555
Score = 210 bits (534), Expect = 7e-54
Identities = 102/154 (66%), Positives = 123/154 (79%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 DTQGFVLYYPQKPLVCTRAMDYLMFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRG 182
DT +VLYYPQKPLV T+AM +L FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRG
Sbjct: 243 DTLAYVLYYPQKPLVTTQAMAHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 302
Query: 183 FHRSILYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGED 362
F RSI YR+Y++EEKK G++ +EE E P+ T+ M+HG+YDKLD DGL PPGTRVSGED
Sbjct: 303 FFRSIFYRSYRDEEKKQGTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGED 362
Query: 363 IICGKTVTLPDDPTGA-VQRFTKKDASLALRGHE 461
+I GKT LP D TG+ QR+TK+D S LR E
Sbjct: 363 VIIGKTTPLPQDETGSQAQRYTKRDQSTCLRHSE 396
>pir||T43832 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - barley (fragment) gi|2736117|gb|AAB94059.1|
RPB140 [Hordeum vulgare]
Length = 555
Score = 202 bits (515), Expect = 1e-51
Identities = 97/154 (62%), Positives = 122/154 (78%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 DTQGFVLYYPQKPLVCTRAMDYLMFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRG 182
DT +VLYYPQKPLV TRAM++L+FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRG
Sbjct: 243 DTLAYVLYYPQKPLVTTRAMEHLLFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 302
Query: 183 FHRSILYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGED 362
F RS+ +R+Y++EEKK G++ +EE P+ T M+HG+YDKLD DGL PPGTRVSGED
Sbjct: 303 FFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGED 362
Query: 363 IICGKTVTLP-DDPTGAVQRFTKKDASLALRGHE 461
+I GKT +P DD G R++K+D S +LR E
Sbjct: 363 VIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSE 396
>sp|Q42877|RPB2_LYCES DNA-directed RNA polymerase II 135 kDa polypeptide (RNA polymerase II
subunit 2) gi|2129929|pir||S65068 DNA-directed RNA
polymerase (EC 2.7.7.6) II second largest chain - tomato
gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2
Length = 1191
Score = 202 bits (514), Expect = 1e-51
Identities = 97/154 (62%), Positives = 121/154 (77%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 DTQGFVLYYPQKPLVCTRAMDYLMFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRG 182
DT +VLYYPQKPLV TRAM++L FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRG
Sbjct: 752 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRG 811
Query: 183 FHRSILYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGED 362
F RS+ +R+Y++EEKK G++ +E+ PD + T M+HG+YDKLD DGL PPGTRVSGED
Sbjct: 812 FFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGED 871
Query: 363 IICGKTVTL-PDDPTGAVQRFTKKDASLALRGHE 461
+I GKT + DD G R+T+KD S +LR E
Sbjct: 872 VIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSE 905
>pir||T43842 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - Magnolia virginiana (fragment)
gi|2736121|gb|AAB94061.1| RPB140 [Magnolia virginiana]
Length = 555
Score = 201 bits (510), Expect = 4e-51
Identities = 96/154 (62%), Positives = 122/154 (78%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 DTQGFVLYYPQKPLVCTRAMDYLMFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRG 182
DT +VLYYPQKPLV TRAM++L FR+LPAGINAIVAI CYSGYNQEDS+++N SSIDRG
Sbjct: 243 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRG 302
Query: 183 FHRSILYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGED 362
F RS+ +R+Y++EEKK G++ +E+ P+ T M+HG+YDKLD DGL PPGTRVSGED
Sbjct: 303 FFRSLFFRSYRDEEKKMGTLVKEDFGRPNRESTMGMRHGSYDKLDDDGLAPPGTRVSGED 362
Query: 363 IICGKTVTL-PDDPTGAVQRFTKKDASLALRGHE 461
+I GKT+ + DD G V R+T++D S +LR E
Sbjct: 363 VIIGKTIPIAQDDVQGQVTRYTRRDHSTSLRHSE 396
>pir||T43837 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - spinach (fragment)
gi|2736119|gb|AAB94060.1| RPB140 [Spinacia oleracea]
Length = 556
Score = 200 bits (508), Expect = 7e-51
Identities = 95/154 (61%), Positives = 123/154 (79%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 DTQGFVLYYPQKPLVCTRAMDYLMFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRG 182
DT +VLYYPQKPLV TRAM++L FR+LPAGINAIVAI CYSGYNQEDS+++N S+IDRG
Sbjct: 244 DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRG 303
Query: 183 FHRSILYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGED 362
F RS+ +R+Y++EEKK G++ +E+ PD S T M+HG+YDKLD DGL PPGTR +GED
Sbjct: 304 FFRSLFFRSYRDEEKKMGTLDKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCAGED 363
Query: 363 IICGKTVTL-PDDPTGAVQRFTKKDASLALRGHE 461
+I GKT L PD+ TG R++++D S++LR E
Sbjct: 364 VIIGKTTPLAPDEATGPSARYSRRDHSISLRHSE 397
