Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002312A_C01 KCC002312A_c01
(466 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S20790 extensin - almond gi|20420|emb|CAA46634.1| extensin ... 44 0.001
ref|NP_182186.1| extensin -related [Arabidopsis thaliana] gi|254... 43 0.002
ref|XP_344016.1| similar to 5033411B22Rik protein [Rattus norveg... 40 0.010
gb|AAK38636.1|AF329846_1 ring finger protein [Gallus gallus] 40 0.013
pir||C57742 cyclin II - maize gi|516550|gb|AAA20237.1| cyclin IIZm 39 0.029
>pir||S20790 extensin - almond gi|20420|emb|CAA46634.1| extensin [Prunus dulcis]
gi|445616|prf||1909363A extensin
Length = 278
Score = 43.5 bits (101), Expect = 0.001
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +3
Query: 144 SPFALSPSKLKHATHRNCNPTITGLPCRHPCGLTSKQPSTPQRGGHLPSSSRSSSNPFTP 323
SP SPS KH H P + P +HP S P +P H P +S P P
Sbjct: 125 SPPPPSPSPPKHPYHYKSPPPPSPSPPKHPYHYKSPPPPSPSPPKH-PYHYKSPPPPSPP 183
Query: 324 QTDH-----PPTSGPVTPIDKHCPNTHHSVSLPRPTPP 422
+ + PP P P+ + +H S P P+PP
Sbjct: 184 KKPYHYKSPPPPPSPTPPVYSPPKHPYHYKSPPPPSPP 221
Score = 32.7 bits (73), Expect = 2.1
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = +3
Query: 174 KHATHRNCNPTITGLPCRHPCGLTSKQPSTPQRGGHLPSSSRSSSNPFTPQTDHP-PTSG 350
KH H P + P +HP S P +P H P +S P HP
Sbjct: 101 KHPYHYKSPPPPSPSPPKHPYHYKSPPPPSPSPPKH-PYHYKSPPPPSPSPPKHPYHYKS 159
Query: 351 PVTPIDKHCPNTHHSVSLPRPTPP 422
P P + +H S P P+PP
Sbjct: 160 PPPPSPSPPKHPYHYKSPPPPSPP 183
Score = 31.6 bits (70), Expect = 4.6
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Frame = +3
Query: 174 KHATHRNCNPTITGLPCRHPCGLTSKQPSTPQRGGH-------LPSSSRSSSNPFTPQTD 332
KH H P P +HP S P +P H P S +P+ ++
Sbjct: 84 KHPYHYKSPPPPVYSPPKHPYHYKSPPPPSPSPPKHPYHYKSPPPPSPSPPKHPYHYKSP 143
Query: 333 HPPTSGPVTPIDKHCPNTHHSVSLPRPTPP 422
PP+ P KH P + S P P+PP
Sbjct: 144 PPPSPSP----PKH-PYHYKSPPPPSPSPP 168
>ref|NP_182186.1| extensin -related [Arabidopsis thaliana] gi|25409018|pir||C84905
probable extensin [imported] - Arabidopsis thaliana
gi|3831447|gb|AAC69930.1| putative extensin [Arabidopsis
thaliana] gi|20197778|gb|AAM15241.1| putative extensin
[Arabidopsis thaliana]
Length = 394
Score = 42.7 bits (99), Expect = 0.002
Identities = 26/75 (34%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = +3
Query: 219 PCRHPCGLTSKQPSTPQRGGHLPSSSRSSSNPFT-PQTDHPPTSGPVTPIDKHCPNTHHS 395
P + P +QP +P R PS R P T P+ PPTS P H P + H
Sbjct: 42 PAKQPSPPRQRQPRSPPRQQDPPSPPRQQQQPLTPPRQKAPPTSPPQERSPYHSPPSRH- 100
Query: 396 VSLPRPTPPAASGFP 440
+ PTPP A+ P
Sbjct: 101 --MSPPTPPKAATPP 113
>ref|XP_344016.1| similar to 5033411B22Rik protein [Rattus norvegicus]
Length = 516
Score = 40.4 bits (93), Expect = 0.010
Identities = 22/68 (32%), Positives = 30/68 (43%), Gaps = 3/68 (4%)
Frame = +3
Query: 246 SKQPSTPQRGGHLPSSSRSSSNPFTPQTDHPPTSGPVTPIDKHC---PNTHHSVSLPRPT 416
+K + P R S ++ P T QT P ++G T +D H P T H + PRP
Sbjct: 106 NKTTTRPDRTKSRGMSHKNGVGPGTKQTPKPSSTGRNTSVDSHATRKPGTRHRHTSPRPV 165
Query: 417 PPAASGFP 440
PP P
Sbjct: 166 PPQRKPLP 173
>gb|AAK38636.1|AF329846_1 ring finger protein [Gallus gallus]
Length = 879
Score = 40.0 bits (92), Expect = 0.013
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Frame = +3
Query: 222 CRHPCGLTSKQPSTPQRGG----------HLPSSSRSSSNPFTPQTDHPPTSGPVTPIDK 371
C H G QP P + H SSS +SS+P P P + PI +
Sbjct: 556 CPHSHGNPPPQPQPPPQVDYVIPHPVHPFHPSSSSHASSHPVPPPPPTHPLANAAAPIPQ 615
Query: 372 HCPNTHHSVS--LPRPTPPA 425
H P H ++S +P PPA
Sbjct: 616 HLPAAHQAISHHIPATAPPA 635
>pir||C57742 cyclin II - maize gi|516550|gb|AAA20237.1| cyclin IIZm
Length = 456
Score = 38.9 bits (89), Expect = 0.029
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +3
Query: 231 PCGLTSKQPSTPQRGGHLPSSSRSSSNPFTPQTDHPPTSGPVTPIDKHCPNTHHSVSLPR 410
P P+ P + L +S+RS S+ D P + P P+ +H T ++P
Sbjct: 13 PTSSAKLNPTVPLKKPSLATSARSVSSSIRGSADKPASIKPAPPVARHGSATQRHNNVPP 72
Query: 411 PTPPAASGFPNRA 449
P P + P+RA
Sbjct: 73 PKVPTIADVPSRA 85
