KCC002288A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002288A_C01 KCC002288A_c01
ggaaGTGATAGCCCTTGCTTAGACCACAACTCGCCCGATTGGCCCAGGTCTTTTCAACGG
CCCCATTTCGGCTTCGTCTCATTTATAGCCTGTTTTACGCTCATCAGGGCAGAAAAGCTG
CATAACATACTGTGGTAACAATTTAACCGGCTAGCCGCTGAACTTGCAAGCAGACCGGAA
CTAATTGGCCCCACTGACTGGCCTGTTCGCCTGTTACTCAGTCAGGCAGGATGCGTGCAC
CATCAGTATAGACAAGTCGATTCGGCAAAGGCCCCGGCGGACTCGGCGCCAAGTGACTGC
GCGATCGGACCATAGGCTTTTGCGTTGAGGAGCGTGCAGCAATACTGCCAGCATCTCTAG
CAGCTTTGGAGGCAGCAGCATGGCGCTGGTAGCGACGGACGCGCAGAAGAAGGCCATGGA
GGACCTGCTGCCGAACCAGGAGGACCTGCTCTATGAGGAGGAGTTGGCTCGCAACCCTTA
CAACCTAAAGATGTGGATCCGCTATATCCATGCTCGCGCGGACGCAGTGCCGAAGCGGAG
ATATCTGCTGTATGAGCGTGCCGTCAGGGCCCTGCCCGGCTCCTACAAGCTGTGGCACGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002288A_C01 KCC002288A_c01
         (600 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_198226.1| expressed protein [Arabidopsis thaliana] gi|768...    87  1e-16
dbj|BAC07006.1| putative adapter protein ATH-55 [Oryza sativa (j...    78  8e-14
dbj|BAB85349.1| P0519D04.7 [Oryza sativa (japonica cultivar-grou...    75  5e-13
gb|AAH56771.1| Unknown (protein for MGC:63498) [Danio rerio]           69  4e-11
gb|AAH54579.1| Unknown (protein for MGC:63949) [Danio rerio]           69  4e-11

>ref|NP_198226.1| expressed protein [Arabidopsis thaliana] gi|7682783|gb|AAF67364.1|
           Hypothetical protein T32B20.g [Arabidopsis thaliana]
          Length = 917

 Score = 87.4 bits (215), Expect = 1e-16
 Identities = 37/60 (61%), Positives = 53/60 (87%)
 Frame = +2

Query: 419 EDLLPNQEDLLYEEELARNPYNLKMWIRYIHARADAVPKRRYLLYERAVRALPGSYKLWH 598
           +DL P+QEDLLYEEEL RN ++LK+W RY+ A+A++  K+R+++YERA++ALPGSYKLW+
Sbjct: 5   KDLYPSQEDLLYEEELLRNQFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSYKLWY 64

>dbj|BAC07006.1| putative adapter protein ATH-55 [Oryza sativa (japonica
           cultivar-group)]
          Length = 931

 Score = 78.2 bits (191), Expect = 8e-14
 Identities = 39/83 (46%), Positives = 54/83 (64%), Gaps = 3/83 (3%)
 Frame = +2

Query: 359 SSFGGSSMALVATDAQKKAM---EDLLPNQEDLLYEEELARNPYNLKMWIRYIHARADAV 529
           S  GG      A+ A  +A+    ++ P ++DL YEEE+ R P+ LK W RY+ ARA A 
Sbjct: 3   SPAGGPVAVAAASAAAAEALGISPEMYPTEDDLAYEEEILREPFKLKGWWRYLVARAAAP 62

Query: 530 PKRRYLLYERAVRALPGSYKLWH 598
             +R ++YERA++ALPGSYKLWH
Sbjct: 63  FAKRAVIYERALKALPGSYKLWH 85

>dbj|BAB85349.1| P0519D04.7 [Oryza sativa (japonica cultivar-group)]
           gi|20805040|dbj|BAB92715.1| P0478H03.32 [Oryza sativa
           (japonica cultivar-group)]
          Length = 634

 Score = 75.5 bits (184), Expect = 5e-13
 Identities = 33/57 (57%), Positives = 46/57 (79%)
 Frame = +2

Query: 428 LPNQEDLLYEEELARNPYNLKMWIRYIHARADAVPKRRYLLYERAVRALPGSYKLWH 598
           LP++ DL YEE++ R+P++++ W RY+ ARA A  + R ++YERAVRALPGSYKLWH
Sbjct: 7   LPSEADLPYEEDVLRDPHSIRPWRRYLAARAAAPLQERAVIYERAVRALPGSYKLWH 63

>gb|AAH56771.1| Unknown (protein for MGC:63498) [Danio rerio]
          Length = 851

 Score = 69.3 bits (168), Expect = 4e-11
 Identities = 30/59 (50%), Positives = 42/59 (70%)
 Frame = +2

Query: 422 DLLPNQEDLLYEEELARNPYNLKMWIRYIHARADAVPKRRYLLYERAVRALPGSYKLWH 598
           D+L   +DL YEEE+ RNPY++K W+RYI  +  A      ++YERA++ LPGSYKLW+
Sbjct: 9   DVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKSVLNMIYERALKELPGSYKLWY 67

>gb|AAH54579.1| Unknown (protein for MGC:63949) [Danio rerio]
          Length = 849

 Score = 69.3 bits (168), Expect = 4e-11
 Identities = 30/59 (50%), Positives = 42/59 (70%)
 Frame = +2

Query: 422 DLLPNQEDLLYEEELARNPYNLKMWIRYIHARADAVPKRRYLLYERAVRALPGSYKLWH 598
           D+L   +DL YEEE+ RNPY++K W+RYI  +  A      ++YERA++ LPGSYKLW+
Sbjct: 9   DVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKSVLNMIYERALKELPGSYKLWY 67



EST assemble image


clone accession position
1 LCL037f11_r AV628162 1 258
2 LCL068a11_r AV629873 5 495
3 LCL016c08_r AV626837 11 285
4 HCL013g11_r AV640293 12 508
5 MXL012a05_r BP093684 13 387
6 LC031c11_r AV621107 20 527
7 MXL003a11_r BP093077 25 260
8 LCL046g06_r AV628767 30 508
9 LCL065b10_r AV629750 154 601




Chlamydomonas reinhardtii
Kazusa DNA Research Institute