KCC002285A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002285A_C01 KCC002285A_c01
acttcGTTCCCCACGTCGATGCGTTCCCTGGCCCGGCTTACTCGGTCTCATTGCCCTAAT
AACTGCGGACTCTCTATTTCGTCCATCGGCAGCATCGCGCGTTGCTCCTCGGTACTGAGG
GCGCAAGGGATAGAGGGGCGGCCTCGCGGCCCCTCTGTGCCGCAGGCGGTGATGGCGCAG
CGGTACTCGAAAGCATACCGCTCCAAAGAGGGCGCTCCTTCCGTGGCGAGGGTCTACCCG
GACGTGTGCGAGAAGGCACCGGCGGAATACAGCGCCTATGAGCAACTAAAGATCAGCTGG
GGCGACCAGGATAACTATGAGGTCGTGCGCAAAGTGGGCCGGGGCAAGTACAGCGAGGTG
TTCGAGGGCATCAACGTGGTGAACGGCTCCAAATGCATCATCAAAATTTTGAAGCCGGTC
AAGAAGAAAAAGGTGCTGCGTGAGATCAAAATTCTGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002285A_C01 KCC002285A_c01
         (459 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_179889.1| casein kinase II alpha chain, putative [Arabido...   122  1e-27
emb|CAD12663.1| casein kinase II alpha subunit [Sinapis alba]         122  1e-27
gb|AAG36872.1|AF239819_1 protein kinase CK2 catalytic subunit CK...   121  4e-27
gb|AAN77301.1| Putative casein kinase II alpha subunit [Oryza sa...   120  9e-27
pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-...   119  2e-26

>ref|NP_179889.1| casein kinase II alpha chain, putative [Arabidopsis thaliana]
           gi|25287638|pir||B84620 hypothetical protein At2g23070
           [imported] - Arabidopsis thaliana
           gi|3169180|gb|AAC17823.1| putative casein kinase II
           catalytic (alpha) subunit [Arabidopsis thaliana]
           gi|17065110|gb|AAL32709.1| putative casein kinase II
           catalytic (alpha) subunit [Arabidopsis thaliana]
           gi|20148299|gb|AAM10040.1| putative casein kinase II
           catalytic (alpha) subunit [Arabidopsis thaliana]
          Length = 432

 Score =  122 bits (307), Expect = 1e-27
 Identities = 62/96 (64%), Positives = 73/96 (75%)
 Frame = +1

Query: 172 MAQRYSKAYRSKEGAPSVARVYPDVCEKAPAEYSAYEQLKISWGDQDNYEVVRKVGRGKY 351
           +AQ+  K+ R + GAPS ARVY DV    P +Y  YE L + WG QD+YEVVRKVGRGKY
Sbjct: 85  LAQKIGKSIR-RAGAPSKARVYADVNVVRPKDYWDYESLAVQWGVQDDYEVVRKVGRGKY 143

Query: 352 SEVFEGINVVNGSKCIIKILKPVKKKKVLREIKILQ 459
           SEVFEGI+  +  KC+IKILKPVKKKK+ REIKILQ
Sbjct: 144 SEVFEGIHATDNEKCVIKILKPVKKKKIKREIKILQ 179

>emb|CAD12663.1| casein kinase II alpha subunit [Sinapis alba]
          Length = 414

 Score =  122 bits (307), Expect = 1e-27
 Identities = 62/96 (64%), Positives = 73/96 (75%)
 Frame = +1

Query: 172 MAQRYSKAYRSKEGAPSVARVYPDVCEKAPAEYSAYEQLKISWGDQDNYEVVRKVGRGKY 351
           +AQ+  K+ R + GAPS ARVY DV    P +Y  YE L + WG QD+YEVVRKVGRGKY
Sbjct: 66  LAQKIGKSIR-RAGAPSKARVYADVNVIKPKDYWDYESLAVQWGAQDDYEVVRKVGRGKY 124

Query: 352 SEVFEGINVVNGSKCIIKILKPVKKKKVLREIKILQ 459
           SEVFEGI+  +  KC+IKILKPVKKKK+ REIKILQ
Sbjct: 125 SEVFEGIHATDNEKCVIKILKPVKKKKIKREIKILQ 160

>gb|AAG36872.1|AF239819_1 protein kinase CK2 catalytic subunit CK2 alpha-3 [Zea mays]
          Length = 332

 Score =  121 bits (303), Expect = 4e-27
 Identities = 61/80 (76%), Positives = 64/80 (79%)
 Frame = +1

Query: 220 SVARVYPDVCEKAPAEYSAYEQLKISWGDQDNYEVVRKVGRGKYSEVFEGINVVNGSKCI 399
           S ARVY DV    P EY  YE L + WG+QDNYEVVRKVGRGKYSEVFEGINV N  KCI
Sbjct: 2   SKARVYTDVNVLRPKEYWDYEALTVQWGEQDNYEVVRKVGRGKYSEVFEGINVNNNEKCI 61

Query: 400 IKILKPVKKKKVLREIKILQ 459
           IKILKPVKKKK+ REIKILQ
Sbjct: 62  IKILKPVKKKKIKREIKILQ 81

>gb|AAN77301.1| Putative casein kinase II alpha subunit [Oryza sativa (japonica
           cultivar-group)]
          Length = 317

 Score =  120 bits (300), Expect = 9e-27
 Identities = 59/80 (73%), Positives = 64/80 (79%)
 Frame = +1

Query: 220 SVARVYPDVCEKAPAEYSAYEQLKISWGDQDNYEVVRKVGRGKYSEVFEGINVVNGSKCI 399
           S ARVY DV    P EY  YE L + WG+QD+YEVVRKVGRGKYSEVFEGINV N  +CI
Sbjct: 2   STARVYADVNVHRPREYWDYEALAVEWGEQDDYEVVRKVGRGKYSEVFEGINVTNDERCI 61

Query: 400 IKILKPVKKKKVLREIKILQ 459
           IKILKPVKKKK+ REIKILQ
Sbjct: 62  IKILKPVKKKKIKREIKILQ 81

>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro-
           AnthraquinoneCK2 KINASE COMPLEX
          Length = 325

 Score =  119 bits (298), Expect = 2e-26
 Identities = 60/80 (75%), Positives = 64/80 (80%)
 Frame = +1

Query: 220 SVARVYPDVCEKAPAEYSAYEQLKISWGDQDNYEVVRKVGRGKYSEVFEGINVVNGSKCI 399
           S ARVY DV    P EY  YE L + WG+QD+YEVVRKVGRGKYSEVFEGINV N  KCI
Sbjct: 1   SKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCI 60

Query: 400 IKILKPVKKKKVLREIKILQ 459
           IKILKPVKKKK+ REIKILQ
Sbjct: 61  IKILKPVKKKKIKREIKILQ 80



EST assemble image


clone accession position
1 LCL099a12_r AV631745 1 459
2 HCL013b06_r AV640251 6 155
3 MXL071b08_r BP097167 9 373




Chlamydomonas reinhardtii
Kazusa DNA Research Institute