KCC002265A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002265A_C01 KCC002265A_c01
gcttactaccttcatagataacaagttaCTCGATCAATAAGTTAGAACAGACTCAGAACG
AGAACGACACAACTTTATTGGGCAGTCGACCGCCCCGTCGTCGCGGGTGGCGCAGCTTGA
AACAATGGCGGACAAGTCTGGAGTAGGGAAAGGCGATGTGGAGGCTCCGGAGCCTGCGCC
TTGCCCCTTTGACGTGAACCCTGTCGACCTGCTCACGATGAATGAGGGCAAGGACATGGC
CGCTCTTAAAGGCCTGGGCGGTGCGCAAGGGCTTGCAAAAAAGCTGGCGACAAGTTTGCA
CGAGGGGCTGGACCCAAGTACAGTAGATGCGCACGCGGAGGCTTACGGACACAACAAGTT
TAAGGAAACGCCGCCCAAGTCGTTCTTCTCGCTGGTATGGGAGAACCTTCAAGACCCCGT
CATTATCATTCTGTGCGTTGCGGCGGCGGTATCAACAGCACTGGGCGCGGCCATCCCCGA
GCAGCGAAAGCACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002265A_C01 KCC002265A_c01
         (494 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T14453 Ca2+-transporting ATPase (EC 3.6.3.8), calmodulin-st...    78  5e-14
dbj|BAB89725.1| putative type IIB calcium ATPase [Oryza sativa (...    76  2e-13
ref|NP_191292.1| potential calcium-transporting ATPase 11, plasm...    75  6e-13
gb|AAL73984.1|AF466149_1 type IIB calcium ATPase [Medicago trunc...    75  6e-13
ref|NP_564295.1| calcium-transporting ATPase 1, plasma membrane-...    74  1e-12

>pir||T14453 Ca2+-transporting ATPase (EC 3.6.3.8), calmodulin-stimulated - wild
           cabbage gi|1805654|emb|CAA68234.1| calmodulin-stimulated
           calcium-ATPase [Brassica oleracea]
          Length = 1025

 Score = 78.2 bits (191), Expect = 5e-14
 Identities = 40/95 (42%), Positives = 57/95 (59%)
 Frame = +2

Query: 188 FDVNPVDLLTMNEGKDMAALKGLGGAQGLAKKLATSLHEGLDPSTVDAHAEAYGHNKFKE 367
           F V   +L +M    D  +L   GGA+G+A+KL+ SL EG+  + +D   + YG N++ E
Sbjct: 93  FHVEADELASMVRNHDTRSLTKSGGAEGIAQKLSVSLTEGVRSNDLDIREKIYGANRYAE 152

Query: 368 TPPKSFFSLVWENLQDPVIIILCVAAAVSTALGAA 472
            P +SF + VWE LQD  +IIL V A VS  +G A
Sbjct: 153 KPARSFLTFVWEALQDVTLIILMVCAVVSIGVGVA 187

>dbj|BAB89725.1| putative type IIB calcium ATPase [Oryza sativa (japonica
           cultivar-group)] gi|20161324|dbj|BAB90248.1| putative
           type IIB calcium ATPase [Oryza sativa (japonica
           cultivar-group)]
          Length = 1043

 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 40/111 (36%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
 Frame = +2

Query: 143 VGKGDVEAPEPA-PCPFDVNPVDLLTMNEGKDMAALKGLGGAQGLAKKLATSLHEGLDPS 319
           V K +   PE A  C F V+  +L ++  G D  +L+   G  G+A+K+A SL +G+   
Sbjct: 85  VRKTEHPLPELARQCGFSVSAEELASIVRGHDTKSLRFHNGVDGIARKVAVSLADGVKSD 144

Query: 320 TVDAHAEAYGHNKFKETPPKSFFSLVWENLQDPVIIILCVAAAVSTALGAA 472
                AE YG N++ E PP++F+  +W+  QD  +++L   AAVS A+G A
Sbjct: 145 DAGLRAEVYGANQYTEKPPRTFWMFLWDASQDMTLLLLAFCAAVSVAIGLA 195

>ref|NP_191292.1| potential calcium-transporting ATPase 11, plasma membrane-type
           (Ca2+-ATPase, isoform 11) [Arabidopsis thaliana]
           gi|12229660|sp|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type
           (Ca(2+)-ATPase isoform 11) gi|11267343|pir||T45811
           Ca2+-transporting ATPase-like protein - Arabidopsis
           thaliana gi|6735312|emb|CAB68139.1| Ca2+-transporting
           ATPase-like protein [Arabidopsis thaliana]
          Length = 1025

 Score = 74.7 bits (182), Expect = 6e-13
 Identities = 38/95 (40%), Positives = 56/95 (58%)
 Frame = +2

Query: 188 FDVNPVDLLTMNEGKDMAALKGLGGAQGLAKKLATSLHEGLDPSTVDAHAEAYGHNKFKE 367
           F V   +L +M    D  +L  +GG +G+A+K++ SL EG+  S +    + YG N++ E
Sbjct: 93  FYVEADELASMVRNHDTKSLTKIGGPEGIAQKVSVSLAEGVRSSELHIREKIYGENRYTE 152

Query: 368 TPPKSFFSLVWENLQDPVIIILCVAAAVSTALGAA 472
            P +SF + VWE LQD  +IIL V A VS  +G A
Sbjct: 153 KPARSFLTFVWEALQDITLIILMVCAVVSIGVGVA 187

>gb|AAL73984.1|AF466149_1 type IIB calcium ATPase [Medicago truncatula]
          Length = 1037

 Score = 74.7 bits (182), Expect = 6e-13
 Identities = 33/95 (34%), Positives = 58/95 (60%)
 Frame = +2

Query: 188 FDVNPVDLLTMNEGKDMAALKGLGGAQGLAKKLATSLHEGLDPSTVDAHAEAYGHNKFKE 367
           FD++P ++ ++   +D   L   GG + +A+KL+ S+ EG++ ++VD   + +G N++ E
Sbjct: 94  FDIHPNEIASIVRSQDYKNLSNNGGVEAVARKLSVSIDEGVNDTSVDCRQQIFGANRYTE 153

Query: 368 TPPKSFFSLVWENLQDPVIIILCVAAAVSTALGAA 472
            P ++F   VW+ LQD  + IL V A VS  +G A
Sbjct: 154 KPSRTFLMFVWDALQDLTLTILMVCAVVSIGIGLA 188

>ref|NP_564295.1| calcium-transporting ATPase 1, plasma membrane-type (Ca2+-ATPase,
           isoform 1) [Arabidopsis thaliana]
          Length = 946

 Score = 73.6 bits (179), Expect = 1e-12
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
 Frame = +2

Query: 53  SERERHNFIGQSTAPSSRVAQLETMADKSGVGKGDVEAPEPAP-----CPFDVNPVDLLT 217
           S+R     I +S     RVA L + A    +    + +    P       F++ P +L +
Sbjct: 46  SKRSEAEAIRRSNQEKFRVAVLVSQAALQFINSLKLSSEYTLPEEVRKAGFEICPDELGS 105

Query: 218 MNEGKDMAALKGLGGAQGLAKKLATSLHEGLDPST--VDAHAEAYGHNKFKETPPKSFFS 391
           + EG D+  LK  GG +GL +KL+TS+  G+  S   +    E YG N+F E+P + F+ 
Sbjct: 106 IVEGHDLKKLKIHGGTEGLTEKLSTSIASGISTSEDLLSVRKEIYGINQFTESPSRGFWL 165

Query: 392 LVWENLQDPVIIILCVAAAVSTALG 466
            VWE LQD  ++IL   A VS  +G
Sbjct: 166 FVWEALQDTTLMILAACAFVSLIVG 190



EST assemble image


clone accession position
1 LCL032c05_r AV627802 1 337
2 MXL033a10_r BP094947 29 495
3 HCL010a05_r AV640082 48 362




Chlamydomonas reinhardtii
Kazusa DNA Research Institute