Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002255A_C01 KCC002255A_c01
(532 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM96690.1| MOC1 [Chlamydomonas reinhardtii] 187 2e-73
ref|NP_200369.1| expressed protein [Arabidopsis thaliana] gi|975... 45 8e-04
ref|NP_649240.1| CG5047-PA [Drosophila melanogaster] gi|7296330|... 41 0.011
emb|CAB42557.1| SF2/ASF-like splicing modulator Srp30 [Arabidops... 40 0.019
ref|NP_172386.2| arginine/serine-rich splicing factor, atSRp30 [... 40 0.019
>gb|AAM96690.1| MOC1 [Chlamydomonas reinhardtii]
Length = 373
Score = 187 bits (475), Expect(2) = 2e-73
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +3
Query: 240 GSSSLESHPVKRAFLSIGVSPNDLERAARLEPSVLAVDKLDRLHGMIDLLLGASLSPSDI 419
GSSSLESHPVKRAFLSIGVSPNDLERAARLEPSVLAVDKLDRLHGMIDLLLGASLSPSDI
Sbjct: 51 GSSSLESHPVKRAFLSIGVSPNDLERAARLEPSVLAVDKLDRLHGMIDLLLGASLSPSDI 110
Query: 420 GQVLLAYPQAFQLSLDRAREVLDFLRDDMHLSESQVR 530
GQVLLAYPQAFQLSLDRAREVLDFLRDDMHLSESQVR
Sbjct: 111 GQVLLAYPQAFQLSLDRAREVLDFLRDDMHLSESQVR 147
Score = 110 bits (275), Expect(2) = 2e-73
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = +2
Query: 89 MQQQLYRQTIRHQHQLLHARGPSLASTSGRPCARPAGDSRRSLRCYSYTTGEQLL 253
MQQQLYRQTIRHQHQLLHARGPSLASTSGRPCARPAGDSRRSLRCYSYTTG L
Sbjct: 1 MQQQLYRQTIRHQHQLLHARGPSLASTSGRPCARPAGDSRRSLRCYSYTTGSSSL 55
>ref|NP_200369.1| expressed protein [Arabidopsis thaliana] gi|9758592|dbj|BAB09225.1|
gene_id:MDF20.2~pir||T05643~similar to unknown protein
[Arabidopsis thaliana] gi|17065230|gb|AAL32769.1|
Unknown protein [Arabidopsis thaliana]
gi|23197866|gb|AAN15460.1| Unknown protein [Arabidopsis
thaliana]
Length = 496
Score = 44.7 bits (104), Expect = 8e-04
Identities = 24/83 (28%), Positives = 44/83 (52%), Gaps = 1/83 (1%)
Frame = +3
Query: 282 LSIGVSPNDLERAARLEPSVLAVDKLDRLHGMIDLLLGASLSPSDIGQVLLAYPQAFQLS 461
LS+GV D++R +P +L + L I L+G + S IGQ++ A P F S
Sbjct: 227 LSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYS 286
Query: 462 LDRA-REVLDFLRDDMHLSESQV 527
++ + R + +L +++ + E+ V
Sbjct: 287 VENSLRPTIRYLIEEVGIKETDV 309
>ref|NP_649240.1| CG5047-PA [Drosophila melanogaster] gi|7296330|gb|AAF51620.1|
CG5047-PA [Drosophila melanogaster]
gi|15291799|gb|AAK93168.1| LD27042p [Drosophila
melanogaster]
Length = 354
Score = 40.8 bits (94), Expect = 0.011
Identities = 30/107 (28%), Positives = 50/107 (46%)
Frame = +3
Query: 210 VPSAATATPLGSSSLESHPVKRAFLSIGVSPNDLERAARLEPSVLAVDKLDRLHGMIDLL 389
VPS A + +SS + FLS+GV + +ER L VL +D + I L
Sbjct: 78 VPSFNLAAYVNNSS-----TLQQFLSLGVDLHSIERRKGLGDFVLKLDFEKNVKPYITFL 132
Query: 390 LGASLSPSDIGQVLLAYPQAFQLSLDRAREVLDFLRDDMHLSESQVR 530
+ +SP D G++ P F+ LD + +++L+ E++ R
Sbjct: 133 VDQGVSPDDFGRMFTKNPLLFKEDLDDLQTRVNYLKSKRFSDEARQR 179
>emb|CAB42557.1| SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana]
gi|23297699|gb|AAN13011.1| putative SF2/ASF splicing
modulator Srp30 [Arabidopsis thaliana]
Length = 268
Score = 40.0 bits (92), Expect = 0.019
Identities = 26/82 (31%), Positives = 43/82 (51%)
Frame = -1
Query: 532 VRTWDSLRCMSSRRKSSTSRARSRESWKACGYASRTCPISEGDNDAPSSRSIIPCSRSSL 353
VR ++S S S + R+RSR +C Y+S++ +S + +P SR + SRS
Sbjct: 182 VREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRP-LSRSRSLY 240
Query: 352 STARTEGSNLAARSRSFGDTPI 287
S+ S +RSRS ++P+
Sbjct: 241 SSVSRSQSRSKSRSRSRSNSPV 262
>ref|NP_172386.2| arginine/serine-rich splicing factor, atSRp30 [Arabidopsis
thaliana]
Length = 295
Score = 40.0 bits (92), Expect = 0.019
Identities = 26/82 (31%), Positives = 43/82 (51%)
Frame = -1
Query: 532 VRTWDSLRCMSSRRKSSTSRARSRESWKACGYASRTCPISEGDNDAPSSRSIIPCSRSSL 353
VR ++S S S + R+RSR +C Y+S++ +S + +P SR + SRS
Sbjct: 182 VREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRP-LSRSRSLY 240
Query: 352 STARTEGSNLAARSRSFGDTPI 287
S+ S +RSRS ++P+
Sbjct: 241 SSVSRSQSRSKSRSRSRSNSPV 262
