KCC002252A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002252A_C01 KCC002252A_c01
gctccgtatCCATATTCCGCGCGCTGAGTTCTTGCTGCATAGATACATATCAGAAAGGAA
CACCTGCTCGCTGTCGCTGGCTGCGAGGGCTCGGAAACGTGGGCGCGCAATAGTCGCTGA
GTCGCGCCTTTCCGCTTTCGCTGGAACTTCAGGGGCATGCAGGCCCACCTTCAGTCTCGG
CCGGTGGCCTTGCAACAACGGGCGAGGCCTGCAGCACAGTTTCCATCGCACGCCGGGGCC
TTGGGGAGGTCGCGCCGGAGACAGGCGGTGGTAGTATCGGCACGGCACAAAGTAGATCAA
AATGCGAAGGACGATGCTTATAACCGGAACATGCAGCGTGAAATGGGCTGGAGCCACCTC
AACCCGTACGAGTACCACTGGGACCGCGGCCTGTACTACCACGAAATCATTCCCAACCTC
ATTTGTGGCACACAGCCCCGCAATGCCGGCGAGGTGGACACGCTGGCGGACAACGAGGGC
ATCACACACATCCTGAACCTGCAGGAGGACAAGGACATGCACTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002252A_C01 KCC002252A_c01
         (524 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566383.1| expressed protein [Arabidopsis thaliana] gi|601...    59  4e-08
gb|AAM64580.1| unknown [Arabidopsis thaliana]                          59  4e-08
gb|AAO61214.1| phosphatase [Streptomyces hygroscopicus]                39  0.031
dbj|BAC31394.1| unnamed protein product [Mus musculus]                 39  0.040
sp|P13729|SGS3_DROSI Salivary glue protein SGS-3 precursor gi|85...    38  0.069

>ref|NP_566383.1| expressed protein [Arabidopsis thaliana]
           gi|6016700|gb|AAF01527.1|AC009991_23 unknown protein
           [Arabidopsis thaliana]
          Length = 282

 Score = 58.9 bits (141), Expect = 4e-08
 Identities = 33/92 (35%), Positives = 52/92 (55%)
 Frame = +1

Query: 244 GRSRRRQAVVVSARHKVDQNAKDDAYNRNMQREMGWSHLNPYEYHWDRGLYYHEIIPNLI 423
           G +     V +S+++K++       YN  M+R M     +PYEYH D G+ Y  I   LI
Sbjct: 52  GENPGTNGVSLSSKNKMED------YNTAMKRLMR----SPYEYHHDLGMNYTLIRDELI 101

Query: 424 CGTQPRNAGEVDTLADNEGITHILNLQEDKDM 519
            G+QP+   ++D L   + + +ILNLQ+DKD+
Sbjct: 102 VGSQPQKPEDIDHLKQEQNVAYILNLQQDKDI 133

>gb|AAM64580.1| unknown [Arabidopsis thaliana]
          Length = 282

 Score = 58.9 bits (141), Expect = 4e-08
 Identities = 33/92 (35%), Positives = 52/92 (55%)
 Frame = +1

Query: 244 GRSRRRQAVVVSARHKVDQNAKDDAYNRNMQREMGWSHLNPYEYHWDRGLYYHEIIPNLI 423
           G +     V +S+++K++       YN  M+R M     +PYEYH D G+ Y  I   LI
Sbjct: 52  GENPGTNGVSLSSKNKMED------YNTAMKRLMR----SPYEYHHDLGMNYTLIRDELI 101

Query: 424 CGTQPRNAGEVDTLADNEGITHILNLQEDKDM 519
            G+QP+   ++D L   + + +ILNLQ+DKD+
Sbjct: 102 VGSQPQKPEDIDHLKQEQNVAYILNLQQDKDI 133

>gb|AAO61214.1| phosphatase [Streptomyces hygroscopicus]
          Length = 331

 Score = 39.3 bits (90), Expect = 0.031
 Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
 Frame = +3

Query: 234 RGLGEVAPETGG----GSIGTAQSRSKCEGRCL*PEHAA*NGLEPPQPVRVPL------G 383
           R  G  AP  G     GS G + SR +C+     P       + P   + +P       G
Sbjct: 2   RSAGPSAPSNGSTPRPGSTGRSGSRRRCDRTGRPPRRTGSAPIRPLPSLAIPFVVFPFSG 61

Query: 384 PRPVLPRN---HSQPHLWHTAPQCRRGG----HAGGQRGHHTHPEPAGG 509
           PR   PR+   HS   +  TAP+ R GG     A  +   +THP   GG
Sbjct: 62  PRSFRPRSFGPHSSDRVLRTAPETRTGGPPYRPAPRECSMNTHPISHGG 110

>dbj|BAC31394.1| unnamed protein product [Mus musculus]
          Length = 165

 Score = 38.9 bits (89), Expect = 0.040
 Identities = 44/151 (29%), Positives = 56/151 (36%), Gaps = 3/151 (1%)
 Frame = -2

Query: 514 PCPPAGSGCV*CPRCPPACPPRRHCGAVCHK*GWE*FRGSTGRGPSGTRTG*GGSSPFHA 335
           P PPA       PR PP+ PPRR C +     GW   R   GR P G       S P   
Sbjct: 4   PPPPASP-----PRGPPSSPPRRRCASPRQSPGWAARR--AGRSPPGR-----SSCPAAR 51

Query: 334 ACSGYKHRPSHFDLLCAVPILPPPVSGATSPRPRRAMETVLQASPVVARPPAETEGG--- 164
            C G  H  S  ++           SG +  R R        ASP      A + G    
Sbjct: 52  YCCGV-HTNSSLEV----------ASGLSEKRARP------PASPAPPPSAAASSGNRLL 94

Query: 163 PACP*SSSESGKARLSDYCAPTFPSPRSQRQ 71
           P  P  ++ SG +  S +  P  P+P +  Q
Sbjct: 95  PLQPPVATPSGLSSASWWPLPPLPTPGAATQ 125

>sp|P13729|SGS3_DROSI Salivary glue protein SGS-3 precursor gi|85217|pir||S01358 salivary
           glue protein sgs-3 precursor - fruit fly  (Drosophila
           simulans)
          Length = 217

 Score = 38.1 bits (87), Expect = 0.069
 Identities = 23/57 (40%), Positives = 30/57 (52%)
 Frame = +2

Query: 353 ATSTRTSTTGTAACTTTKSFPTSFVAHSPAMPARWTRWRTTRASHTS*TCRRTRTCT 523
           +T+T T+TT T   TTT++ PT      P   +  T   TTRA  T  TC+ T T T
Sbjct: 48  STTTTTTTTTTTTTTTTRAPPTK-----PTCKSTSTTTTTTRAPPTKPTCKSTSTTT 99



EST assemble image


clone accession position
1 HCL008d07_r AV639991 1 524
2 LCL014b11_r AV626716 10 321
3 MXL016b06_r BP093950 55 501




Chlamydomonas reinhardtii
Kazusa DNA Research Institute