KCC002244A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002244A_C01 KCC002244A_c01
caggaatagacgcacgcggcccaacggcaactgggcgcgaagccccacggatagctgctc
ctgttcagtctgctttagcaCCTGTCGCGTAGCCTTAGCATCGATACGTTGAATAATCGG
TCGGCGCTAATATGGCGGACGCCGGCGCCGCTGGCGGTGGAGATGCGTCGCAGCCAACCC
TATTGCAGAGCTGGTACAACTGGGGCGGCAGCATGGTGACATATGCGCAGCAGACTCTCA
ATAGCTTTATGGGTTGGGAGGACCTGGAGGTGGTTGACCCTGAGGCTGAGAAGGCCAAGA
AGGGGCAGGATGCCACCGCGACTGGCCTTCTGGAGCAGGAGCGCAAGCAAGCTTGGGGCA
CCAAGCAATTCCAGCAGTACATCGGCGCGGATGTGACCAGTCTGCTGAGCGTGCCGGTGT
GGATTATGGAGCCGTTCACTATCCTGCAGAAGGCTGCGGAGATTATGGAATACACGGAGC
TGCTGGACGCCGCTGACACCACCGAGGACGAGTTTGACCGGTTTGCGCTTGTGGCTGCGT
ACTGCGTGTCGCCTTTTGGCGCCGCTGAGCGCGCCTGGAAGCCGTTCAACCCCATCCTGG
GCGAGACGTTTGAGCTGGAGGTGGGCAGCGGTGTGCGCTACCTGGCGGAGCAGGTCAGCC
ACCACCCGCCCATCTGCGCCGCACACGCCCAGAACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002244A_C01 KCC002244A_c01
         (696 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_195830.1| expressed protein [Arabidopsis thaliana] gi|113...   157  1e-37
ref|NP_187541.1| oxysterol-binding protein -related [Arabidopsis...   157  1e-37
ref|NP_200750.1| oxysterol-binding protein - like [Arabidopsis t...   151  1e-35
dbj|BAA97478.1| oxysterol-binding protein [Arabidopsis thaliana]      151  1e-35
dbj|BAB03558.1| hypothetical protein [Macaca fascicularis]             97  3e-19

>ref|NP_195830.1| expressed protein [Arabidopsis thaliana] gi|11358401|pir||T48231
           hypothetical protein T7H20.150 - Arabidopsis thaliana
           gi|7340684|emb|CAB82983.1| putative protein [Arabidopsis
           thaliana] gi|15292811|gb|AAK92774.1| unknown protein
           [Arabidopsis thaliana] gi|20258867|gb|AAM14105.1|
           putative oxysterol-binding protein [Arabidopsis
           thaliana]
          Length = 453

 Score =  157 bits (398), Expect = 1e-37
 Identities = 81/181 (44%), Positives = 119/181 (64%)
 Frame = +3

Query: 153 GGGDASQPTLLQSWYNWGGSMVTYAQQTLNSFMGWEDLEVVDPEAEKAKKGQDATATGLL 332
           GGG  +  +L  S  N+G +M     +++N  MG+E LEV++PE       ++A      
Sbjct: 9   GGGFFA--SLASSITNFGSAM----SKSVNGLMGYEGLEVINPEGSTDDAEEEAGRGRWK 62

Query: 333 EQERKQAWGTKQFQQYIGADVTSLLSVPVWIMEPFTILQKAAEIMEYTELLDAADTTEDE 512
           ++ER   W  K  Q+YIG+DVTS++++PV I EP T+LQK AE+MEY+ LLD AD TED 
Sbjct: 63  QEERDGYW--KMMQKYIGSDVTSMVTLPVIIFEPMTMLQKMAELMEYSYLLDMADKTEDP 120

Query: 513 FDRFALVAAYCVSPFGAAERAWKPFNPILGETFELEVGSGVRYLAEQVSHHPPICAAHAQ 692
           + R    +++ +S + A +R WKPFNPILGET+E+   +G+ ++AEQV HHPP+ A HA+
Sbjct: 121 YMRMVYASSWAISVYYAYQRTWKPFNPILGETYEMTNHNGINFIAEQVCHHPPMSAGHAE 180

Query: 693 N 695
           N
Sbjct: 181 N 181

>ref|NP_187541.1| oxysterol-binding protein -related [Arabidopsis thaliana]
           gi|6478922|gb|AAF14027.1|AC011436_11 putative
           oxysterol-binding protein [Arabidopsis thaliana]
           gi|17065254|gb|AAL32781.1| putative oxysterol-binding
           protein [Arabidopsis thaliana]
           gi|20260050|gb|AAM13372.1| putative oxysterol-binding
           protein [Arabidopsis thaliana]
          Length = 458

 Score =  157 bits (397), Expect = 1e-37
 Identities = 79/181 (43%), Positives = 118/181 (64%)
 Frame = +3

Query: 153 GGGDASQPTLLQSWYNWGGSMVTYAQQTLNSFMGWEDLEVVDPEAEKAKKGQDATATGLL 332
           GGG     +L  S  N G +M     +++N  + +E LEV++PE       ++A+     
Sbjct: 12  GGGSGFFASLASSISNLGSAMT----KSVNGLVPYEGLEVINPEGSTDDAEEEASRGRWK 67

Query: 333 EQERKQAWGTKQFQQYIGADVTSLLSVPVWIMEPFTILQKAAEIMEYTELLDAADTTEDE 512
           +++R   W  K  Q+YIG+DVTS++++PV I EP T+LQK AE+MEY+ LLD AD TED 
Sbjct: 68  QEDRDGYW--KMMQKYIGSDVTSMVTLPVIIFEPMTMLQKMAELMEYSHLLDMADKTEDP 125

Query: 513 FDRFALVAAYCVSPFGAAERAWKPFNPILGETFELEVGSGVRYLAEQVSHHPPICAAHAQ 692
           + R    +++ +S + A +R WKPFNPILGET+E+   +GV +++EQVSHHPP+ A HA+
Sbjct: 126 YLRMVYASSWAISVYYAFQRTWKPFNPILGETYEMANYNGVNFISEQVSHHPPMSAGHAE 185

Query: 693 N 695
           N
Sbjct: 186 N 186

>ref|NP_200750.1| oxysterol-binding protein - like [Arabidopsis thaliana]
           gi|15450786|gb|AAK96664.1| oxysterol-binding protein
           [Arabidopsis thaliana] gi|23197814|gb|AAN15434.1|
           oxysterol-binding protein [Arabidopsis thaliana]
          Length = 457

 Score =  151 bits (381), Expect = 1e-35
 Identities = 72/159 (45%), Positives = 106/159 (66%)
 Frame = +3

Query: 219 TYAQQTLNSFMGWEDLEVVDPEAEKAKKGQDATATGLLEQERKQAWGTKQFQQYIGADVT 398
           T   +++N   G E +EV++PE  K    ++A      ++ER   W  K  Q+YIG+D+T
Sbjct: 25  TAVSRSVNGVQGNEGVEVINPEGGKEDAEEEAQKGRWKDEERDSYW--KMMQKYIGSDIT 82

Query: 399 SLLSVPVWIMEPFTILQKAAEIMEYTELLDAADTTEDEFDRFALVAAYCVSPFGAAERAW 578
           S++++PV I EP T+LQK AEIMEY+ LLD AD  ED + R    +++ +S + A +R W
Sbjct: 83  SMVTLPVVIFEPMTMLQKMAEIMEYSHLLDQADECEDPYLRLVYASSWAISVYYAFQRTW 142

Query: 579 KPFNPILGETFELEVGSGVRYLAEQVSHHPPICAAHAQN 695
           KPFNPILGET+E+    G+ +++EQVSHHPP+ A HA+N
Sbjct: 143 KPFNPILGETYEMVNHGGISFISEQVSHHPPMSAGHAEN 181

>dbj|BAA97478.1| oxysterol-binding protein [Arabidopsis thaliana]
          Length = 453

 Score =  151 bits (381), Expect = 1e-35
 Identities = 72/159 (45%), Positives = 106/159 (66%)
 Frame = +3

Query: 219 TYAQQTLNSFMGWEDLEVVDPEAEKAKKGQDATATGLLEQERKQAWGTKQFQQYIGADVT 398
           T   +++N   G E +EV++PE  K    ++A      ++ER   W  K  Q+YIG+D+T
Sbjct: 25  TAVSRSVNGVQGNEGVEVINPEGGKEDAEEEAQKGRWKDEERDSYW--KMMQKYIGSDIT 82

Query: 399 SLLSVPVWIMEPFTILQKAAEIMEYTELLDAADTTEDEFDRFALVAAYCVSPFGAAERAW 578
           S++++PV I EP T+LQK AEIMEY+ LLD AD  ED + R    +++ +S + A +R W
Sbjct: 83  SMVTLPVVIFEPMTMLQKMAEIMEYSHLLDQADECEDPYLRLVYASSWAISVYYAFQRTW 142

Query: 579 KPFNPILGETFELEVGSGVRYLAEQVSHHPPICAAHAQN 695
           KPFNPILGET+E+    G+ +++EQVSHHPP+ A HA+N
Sbjct: 143 KPFNPILGETYEMVNHGGISFISEQVSHHPPMSAGHAEN 181

>dbj|BAB03558.1| hypothetical protein [Macaca fascicularis]
          Length = 740

 Score = 96.7 bits (239), Expect = 3e-19
 Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
 Frame = +3

Query: 381 IGADVTSLLSVPVWIMEPFTILQKAAEIMEYTELLDAADTTEDEFDRFALVAAYCVSPFG 560
           IG D+ S +S+PV + EP   LQ   E MEY+ELLD A  T+D ++R  LVAA+ VS + 
Sbjct: 385 IGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYC 443

Query: 561 AA--ERAWKPFNPILGETFE-LEVGSGVRYLAEQVSHHPPICAAHAQN 695
           +       KPFNP+LGET+E +    G R+ +EQVSHHPPI A H ++
Sbjct: 444 STYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCES 491



EST assemble image


clone accession position
1 HCL007d03_r AV639929 1 475
2 LC080g06_r AV624652 226 696




Chlamydomonas reinhardtii
Kazusa DNA Research Institute