KCC002190A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002190A_C01 KCC002190A_c01
cgaatagacacattgatacaggccaAGAGACCACAACACGCTGGCCAACTCGACCACTTT
CATGCCAATTTTGCTAGATACCGGGCAAGACATCCATTTGTGACCAGCTACTGAAACAAA
CGCTTATCATTGCGATAGGGCTTTGGGCGAGCGCAGCAGGCGTCGCCGCGGACCCTTATA
GCCCGCAGGGCCAGTGCCCTGATGGCGTCCGGGTACTCGTCGCAAAACCCTGGCGACGGG
CGCAGCCCTCGCGCTCGGCGCAGTGCTCAGATGGAGGAAGCGGAGCTGCTTGTACCTCCT
GAGGCGCCACCTGCACAGCTGTCGCGCAGCATGTTCTCCCAGCCGTCCGCCCGGAGCCCG
CCACCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002190A_C01 KCC002190A_c01
         (366 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_504205.1| putative nuclear protein (31.6 kD) (5E854) [Cae...    38  0.031
sp|P55106|GDF6_BOVIN Growth/differentiation factor 6 precursor (...    35  0.26
gb|AAP06265.1| hypothetical protein [Schistosoma japonicum]            33  1.0
gb|AAH52560.1| Unknown (protein for IMAGE:6272440) [Homo sapiens]      33  1.0
dbj|BAB90096.1| purple acid phosphatase-like protein [Oryza sati...    33  1.3

>ref|NP_504205.1| putative nuclear protein (31.6 kD) (5E854) [Caenorhabditis elegans]
           gi|7500337|pir||T03914 hypothetical protein F32D1.7 -
           Caenorhabditis elegans gi|2291229|gb|AAB65348.1|
           Hypothetical protein F32D1.7 [Caenorhabditis elegans]
          Length = 301

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
 Frame = +1

Query: 82  RARHPFVTSY*NKRLSLR*GFGRAQQASPRTLIARRASALMASGYSSQNPGDGRSPRARR 261
           R+R+P      +K  S   G G +QQA PRT+      +   SG  S N   G S   R 
Sbjct: 119 RSRYPVANDPFDK-FSAYSGPGSSQQAVPRTISKISEESGSGSGSGSGNDSSGSSGPTRM 177

Query: 262 SAQMEEAELLVPPEAPPA---------QLSRSMFSQPS 348
           S Q+       PP  PPA         Q S S  S+PS
Sbjct: 178 SGQVPSTSGPPPPRPPPAGHQNPFLGNQPSTSNTSEPS 215

>sp|P55106|GDF6_BOVIN Growth/differentiation factor 6 precursor (GDF-6)
           (Cartilage-derived morphogenetic protein 2) (CDMP-2)
           gi|1083009|pir||B55452 cartilage-derived morphogenetic
           protein 2 precursor - bovine (fragment)
           gi|632490|gb|AAA61416.1| cartilage-derived morphogenetic
           protein 2 precursor
          Length = 436

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 187 RASALMASGYSSQNPGDGRSPRARR--SAQMEEAELLVPPEAPPAQLSRSMFSQPSARSP 360
           RASA + S    +   +GR PRA R  +   E  +   PP  P  +  R    QP AR P
Sbjct: 1   RASAELGSAKGMRTRKEGRMPRAPRENATAREPLDRQEPPPRPQEEPQRRPPQQPEAREP 60

Query: 361 P 363
           P
Sbjct: 61  P 61

>gb|AAP06265.1| hypothetical protein [Schistosoma japonicum]
          Length = 252

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 199 LMASGYSSQNPGDGRSPRARRSAQMEEAELLVPPEAPPAQLSRSMFSQPSARSPPP 366
           LM S Y   N   G  P    S    ++ +++PP      L + M S P  ++PPP
Sbjct: 146 LMPSDYPQGNGPGGNGPGQGNSGFPGDSVMMMPPPQQQGVLQQHMSSGPQGQAPPP 201

>gb|AAH52560.1| Unknown (protein for IMAGE:6272440) [Homo sapiens]
          Length = 227

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +1

Query: 181 ARRASALMA----SGYSSQNPGDGRSPRARRSAQMEEAELLVPPEAPPAQLSRSMFSQ-P 345
           ARR SA  A    +G  ++ P  G   RAR   +   A+L  PP  PPA  SR   +Q P
Sbjct: 28  ARRNSAPRAPCPPTGPPARPPSRGAPARAREGRRHPAADLDPPPGEPPAAASRGAPAQRP 87

Query: 346 SARSP--PP 366
            + SP  PP
Sbjct: 88  PSESPGAPP 96

>dbj|BAB90096.1| purple acid phosphatase-like protein [Oryza sativa (japonica
           cultivar-group)] gi|20804919|dbj|BAB92599.1| purple acid
           phosphatase-like protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 227

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 26/82 (31%), Positives = 41/82 (49%), Gaps = 9/82 (10%)
 Frame = +1

Query: 148 RAQQASPRTLIARRASALM----ASGYSSQNPGDGRSPRARRSAQMEEAELLVP-----P 300
           RA++ SP +  +RR S L+    A+  S+  P   R+PR +  +++  A  + P     P
Sbjct: 131 RARRRSPSSAGSRRRSRLLSAVAATPPSATRP---RAPRPQGRSRLRSAVAVTPPSAIRP 187

Query: 301 EAPPAQLSRSMFSQPSARSPPP 366
            APP+   R     P+ R PPP
Sbjct: 188 RAPPSAAPRRP-PPPAVRRPPP 208



EST assemble image


clone accession position
1 HCL001a08_r AV639562 1 182
2 LCL012h09_r AV626647 26 366




Chlamydomonas reinhardtii
Kazusa DNA Research Institute