KCC002177A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002177A_C01 KCC002177A_c01
ttaCTTGCCTGAAGTTATCCATCACCTCTTTACAGGACACGAGCTCCATCTTCGCCATAC
TGCTCCGCTTGCTCGCGTCGCCTTTAAGAACCCGTCATTTCGTGATGATGCTTTCCACTC
GTACCGCTGTGCCTTGCTCTGGCCGCACCGCTTTCGGGGCCGTGCGACCGGTCTGCCGGC
CGGCCCGCGCTTCCACGGTGACCCGTGTAGCAAATGTGACTGAGGCATCATTCGATGATG
AAGTACTGAAGGCCAGCGCCGGCCAGCCTGTGCTGGTTGACTTTTGGGCGAGCTGGTGCG
GGCCATGCAAGCTGGTCGCGCCACTGATGGACTGGGCGGAGAAGGAGTACGGTGGCAAGC
TGAAGGTGGTGAAGATCGAGCATGATGCTAACCCAAAGCTCATTGCTCAATACAAGGTGT
ACGGCCTGCCCACCCTCATCGTGTTTAAGGAGGGTCAGGAGCTGGCCAACAGCAAGCGCG
AGGGCGCCATCACCAAGGCCCTGCTCGAGCAGTACCTGACCAAGAACGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002177A_C01 KCC002177A_c01
         (530 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO20260.1| thioredoxin x [Chlamydomonas reinhardtii]              289  2e-77
emb|CAE05750.1| OSJNBa0064G10.1 [Oryza sativa (japonica cultivar...   139  2e-32
ref|NP_564566.1| thioredoxin x [Arabidopsis thaliana] gi|2531054...   129  3e-29
gb|AAF15952.1|AF095753_1 thioredoxin x [Arabidopsis thaliana]         129  3e-29
gb|AAM64283.1| thioredoxin, putative [Arabidopsis thaliana]           122  4e-27

>gb|AAO20260.1| thioredoxin x [Chlamydomonas reinhardtii]
          Length = 145

 Score =  289 bits (739), Expect = 2e-77
 Identities = 142/142 (100%), Positives = 142/142 (100%)
 Frame = +3

Query: 105 MMLSTRTAVPCSGRTAFGAVRPVCRPARASTVTRVANVTEASFDDEVLKASAGQPVLVDF 284
           MMLSTRTAVPCSGRTAFGAVRPVCRPARASTVTRVANVTEASFDDEVLKASAGQPVLVDF
Sbjct: 1   MMLSTRTAVPCSGRTAFGAVRPVCRPARASTVTRVANVTEASFDDEVLKASAGQPVLVDF 60

Query: 285 WASWCGPCKLVAPLMDWAEKEYGGKLKVVKIEHDANPKLIAQYKVYGLPTLIVFKEGQEL 464
           WASWCGPCKLVAPLMDWAEKEYGGKLKVVKIEHDANPKLIAQYKVYGLPTLIVFKEGQEL
Sbjct: 61  WASWCGPCKLVAPLMDWAEKEYGGKLKVVKIEHDANPKLIAQYKVYGLPTLIVFKEGQEL 120

Query: 465 ANSKREGAITKALLEQYLTKNG 530
           ANSKREGAITKALLEQYLTKNG
Sbjct: 121 ANSKREGAITKALLEQYLTKNG 142

>emb|CAE05750.1| OSJNBa0064G10.1 [Oryza sativa (japonica cultivar-group)]
          Length = 180

 Score =  139 bits (350), Expect = 2e-32
 Identities = 70/141 (49%), Positives = 96/141 (67%), Gaps = 8/141 (5%)
 Frame = +3

Query: 120 RTAVPCSGRTAFGAVRPVCRP--------ARASTVTRVANVTEASFDDEVLKASAGQPVL 275
           R   P +   +F  V P   P        AR      V  + ++ F+ EVL++    PVL
Sbjct: 32  RLPPPPASVGSFRVVGPAAAPPGGRRIASARVRCGAAVRFIGQSEFEAEVLQSDL--PVL 89

Query: 276 VDFWASWCGPCKLVAPLMDWAEKEYGGKLKVVKIEHDANPKLIAQYKVYGLPTLIVFKEG 455
           VDF A WCGPC+L+AP++DWA +EY G+LK+VKI+HDANP+LI +YKVYGLP+LI+FK+G
Sbjct: 90  VDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQLIEEYKVYGLPSLILFKDG 149

Query: 456 QELANSKREGAITKALLEQYL 518
           +E+  S+REGAITKA  ++YL
Sbjct: 150 KEVPGSRREGAITKAKFKEYL 170

>ref|NP_564566.1| thioredoxin x [Arabidopsis thaliana] gi|25310549|pir||E96539
           hypothetical protein F14I3.8 [imported] - Arabidopsis
           thaliana gi|5734774|gb|AAD50039.1|AC007980_4 Similar to
           thioredoxin [Arabidopsis thaliana]
           gi|11692892|gb|AAG40049.1|AF324698_1 At1g50320
           [Arabidopsis thaliana]
           gi|11908026|gb|AAG41442.1|AF326860_1 putative
           thioredoxin [Arabidopsis thaliana]
           gi|12642846|gb|AAK00365.1|AF339683_1 putative
           thioredoxin [Arabidopsis thaliana]
           gi|14423374|gb|AAK62369.1|AF386924_1 Similar to
           thioredoxin [Arabidopsis thaliana]
           gi|23198294|gb|AAN15674.1| Similar to thioredoxin
           [Arabidopsis thaliana]
          Length = 182

 Score =  129 bits (323), Expect = 3e-29
 Identities = 59/104 (56%), Positives = 82/104 (78%)
 Frame = +3

Query: 207 VANVTEASFDDEVLKASAGQPVLVDFWASWCGPCKLVAPLMDWAEKEYGGKLKVVKIEHD 386
           +  + E+ F   VL+++  QPVLV+F A+WCGPCKL+ P M+   +EYG KL +VKI+HD
Sbjct: 71  IKEIGESEFSSTVLESA--QPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHD 128

Query: 387 ANPKLIAQYKVYGLPTLIVFKEGQELANSKREGAITKALLEQYL 518
           ANPKLIA++KVYGLP  I+FK+G+E+  S+REGAITKA L++Y+
Sbjct: 129 ANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYI 172

>gb|AAF15952.1|AF095753_1 thioredoxin x [Arabidopsis thaliana]
          Length = 171

 Score =  129 bits (323), Expect = 3e-29
 Identities = 59/104 (56%), Positives = 82/104 (78%)
 Frame = +3

Query: 207 VANVTEASFDDEVLKASAGQPVLVDFWASWCGPCKLVAPLMDWAEKEYGGKLKVVKIEHD 386
           +  + E+ F   VL+++  QPVLV+F A+WCGPCKL+ P M+   +EYG KL +VKI+HD
Sbjct: 60  IKEIGESEFSSTVLESA--QPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHD 117

Query: 387 ANPKLIAQYKVYGLPTLIVFKEGQELANSKREGAITKALLEQYL 518
           ANPKLIA++KVYGLP  I+FK+G+E+  S+REGAITKA L++Y+
Sbjct: 118 ANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYI 161

>gb|AAM64283.1| thioredoxin, putative [Arabidopsis thaliana]
          Length = 181

 Score =  122 bits (305), Expect = 4e-27
 Identities = 58/104 (55%), Positives = 81/104 (77%)
 Frame = +3

Query: 207 VANVTEASFDDEVLKASAGQPVLVDFWASWCGPCKLVAPLMDWAEKEYGGKLKVVKIEHD 386
           +  + E+ F   VL+++  QPVLV+F A+WCGPCKL+ P M+   +EY  KL +VKI+HD
Sbjct: 71  IKEIGESEFSSTVLESA--QPVLVEFVATWCGPCKLIYPAMEALSQEYD-KLTIVKIDHD 127

Query: 387 ANPKLIAQYKVYGLPTLIVFKEGQELANSKREGAITKALLEQYL 518
           ANPKLIA++KVYGLP  I+FK+G+E+  S+REGAITKA L++Y+
Sbjct: 128 ANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYI 171



EST assemble image


clone accession position
1 MX047a05_r BP087924 1 451
2 MXL080g01_r BP097750 4 499
3 MX044g05_r BP087843 9 321
4 HC095d11_r AV639138 102 530




Chlamydomonas reinhardtii
Kazusa DNA Research Institute