KCC002174A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002174A_C01 KCC002174A_c01
ccgacatacatactagagagtTCTCCATCGCGCGTCTCGTGCAAGGGACGCAAACTGCAA
GCGGCCTGTCATTCCAGTCGGCTGCACATTTCTCGGCGCTCCAGCCCGCAAAATGGGTAG
ACCATTCTATGAGTGGCTGGAGGGACGTTGCTACGCCTGCAAGATGTGCCACTGCAACCT
GGCGTCCGCCACAGAGCTCGTTTCACGCCAGTTTCATTCCAAGCACGGGCGGGCGTACCT
GTTCAACACCGCCGTGAACCTGTCCAGCGGCCCGCGCGAGGAGCGCATGATGACCACGGG
CCTGCACGTGGTGTGTGACGTGTACTGCTCCAAATGCATGTGGCCCGTGGGATGGAAGTA
CGAGCTGGCGTATGAGAAGTCCCAGAAGTACAAGGAGGGCAAGGTCATACTGGAGCGGGC
GTGTGTGGTGGACATCAATACGGCCAGCAGCAGCAGCGACGACGACGAGATGCAGGACCA
GATCGGGCAGGAGGGAGCAGAGACCGACAGCGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002174A_C01 KCC002174A_c01
         (513 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_200205.1| zinc-binding protein-related [Arabidopsis thali...   135  3e-31
gb|AAO38447.1| putative zinc binding protein [Oryza sativa (japo...   134  7e-31
ref|NP_566389.1| expressed protein [Arabidopsis thaliana] gi|279...   130  1e-29
gb|AAM67003.1| yippee-like protein [Arabidopsis thaliana]             128  4e-29
sp|P59234|YIPL_SOLTU Yippee-like protein gi|24745964|dbj|BAC2305...   127  6e-29

>ref|NP_200205.1| zinc-binding protein-related [Arabidopsis thaliana]
           gi|27923898|sp|Q9FN32|YPL6_ARATH Yippee-like protein
           At5g53940 gi|10177256|dbj|BAB10724.1| zinc-binding
           protein-like [Arabidopsis thaliana]
           gi|21554253|gb|AAM63328.1| zinc-binding protein-like
           [Arabidopsis thaliana]
          Length = 129

 Score =  135 bits (340), Expect = 3e-31
 Identities = 66/128 (51%), Positives = 86/128 (66%), Gaps = 9/128 (7%)
 Frame = +2

Query: 113 MGRPFYEWLEGRCYACKMCHCNLASATELVSRQFHSKHGRAYLFNTAVNLSSGPREERMM 292
           MGR F   LEGR Y C+ C  +LA   +LVSR FH + G+AYLFN +VN+S GP EER+M
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 293 TTGLHVVCDVYCSKCMWPVGWKYELAYEKSQKYKEGKVILERACVVD---------INTA 445
            +G+H V D++C  C   VGWKYE A+EK+QKYKEGK +LER  +VD         I+T 
Sbjct: 61  LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDEIDLSTEVYIDTH 120

Query: 446 SSSSDDDE 469
            S+SD ++
Sbjct: 121 GSTSDTED 128

>gb|AAO38447.1| putative zinc binding protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 129

 Score =  134 bits (337), Expect = 7e-31
 Identities = 59/102 (57%), Positives = 78/102 (75%)
 Frame = +2

Query: 113 MGRPFYEWLEGRCYACKMCHCNLASATELVSRQFHSKHGRAYLFNTAVNLSSGPREERMM 292
           MGR F   LEG+ Y+CK CH +L  +++++S+ FH KHG+AYLFN  VN++SG +E+RMM
Sbjct: 1   MGRLFVMHLEGKVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRMM 60

Query: 293 TTGLHVVCDVYCSKCMWPVGWKYELAYEKSQKYKEGKVILER 418
            TG+H V D++C  C   VGWKYE A+EKSQ+YKEGK ILER
Sbjct: 61  ITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILER 102

>ref|NP_566389.1| expressed protein [Arabidopsis thaliana]
           gi|27923897|sp|Q9C777|YPL3_ARATH Yippee-like protein
           At3g11230 gi|12321870|gb|AAG50966.1|AC073395_8 unknown
           protein; 53948-55359 [Arabidopsis thaliana]
           gi|30102566|gb|AAP21201.1| At3g11230 [Arabidopsis
           thaliana]
          Length = 129

 Score =  130 bits (327), Expect = 1e-29
 Identities = 59/102 (57%), Positives = 76/102 (73%)
 Frame = +2

Query: 113 MGRPFYEWLEGRCYACKMCHCNLASATELVSRQFHSKHGRAYLFNTAVNLSSGPREERMM 292
           MGR F   LEG+ Y+CK C  NLA   ++VS+ F S+HG+AYLF+  VN+ +G +E+RMM
Sbjct: 1   MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 60

Query: 293 TTGLHVVCDVYCSKCMWPVGWKYELAYEKSQKYKEGKVILER 418
            TG+H V D+YC KC   VGWKYE A+EK+QKYKEGK +LER
Sbjct: 61  MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLER 102

>gb|AAM67003.1| yippee-like protein [Arabidopsis thaliana]
          Length = 129

 Score =  128 bits (322), Expect = 4e-29
 Identities = 58/102 (56%), Positives = 75/102 (72%)
 Frame = +2

Query: 113 MGRPFYEWLEGRCYACKMCHCNLASATELVSRQFHSKHGRAYLFNTAVNLSSGPREERMM 292
           MGR F   LEG+ Y+CK C  NLA   ++ S+ F S+HG+AYLF+  VN+ +G +E+RMM
Sbjct: 1   MGRLFLVNLEGKSYSCKHCKTNLALCDDVFSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 60

Query: 293 TTGLHVVCDVYCSKCMWPVGWKYELAYEKSQKYKEGKVILER 418
            TG+H V D+YC KC   VGWKYE A+EK+QKYKEGK +LER
Sbjct: 61  MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLER 102

>sp|P59234|YIPL_SOLTU Yippee-like protein gi|24745964|dbj|BAC23053.1| yippee-like protein
           [Solanum tuberosum]
          Length = 129

 Score =  127 bits (320), Expect = 6e-29
 Identities = 64/128 (50%), Positives = 82/128 (64%), Gaps = 11/128 (8%)
 Frame = +2

Query: 113 MGRPFYEWLEGRCYACKMCHCNLASATELVSRQFHSKHGRAYLFNTAVNLSSGPREERMM 292
           MGR F   LEG+ Y+CK C  +LA +  +VS+ FH KHG+AYLF+  VN++SG  E RMM
Sbjct: 1   MGRLFVLTLEGKIYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRMM 60

Query: 293 TTGLHVVCDVYCSKCMWPVGWKYELAYEKSQKYKEGKVILERACVV-----------DIN 439
            TG+H V D++C  C   VGWKYE A+EKSQKYKEGK +LER  +            D +
Sbjct: 61  MTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKITGPDGSHYWASHDTH 120

Query: 440 TASSSSDD 463
            A S +DD
Sbjct: 121 VAGSDADD 128



EST assemble image


clone accession position
1 LCL003b09_r AV626149 1 326
2 HC094c11_r AV639046 22 413
3 HCL070h06_r AV643510 32 427
4 LCL024b07_r AV627271 244 513




Chlamydomonas reinhardtii
Kazusa DNA Research Institute