KCC002161A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002161A_C01 KCC002161A_c01
cgtgcgcaaacacgcgggagcgtgttacgcatgtgtgtggcatgatgcgcgtctggaggt
gacgcaGCAGTCCGTTAATGAAGGCATGCGGACGAGCGGGGGCTATTGGCCAAGGGTTCT
CGAGGTGCGCACGCGCGCACCTGCATTCCGCGGCGCGCTGTGCAGCGAGCTGAGTTTGTG
TTGTAGACACAGCTGCCGGGTCCCGATTGATGTGGCTGCCGGACAGGGGGGGGTCCTACG
ATTTGCGGGCCCAGGTCCATTGCGGAGTGTTGTTTTGACGTGACTGACCCGACTAGACGA
TGTGGTTATTCGTGCTGATCGTACCTGACGTGTTTGGCATTTGTTCCATGAGAGGCTCTG
TCGGCCTCCTTCCGGAATCCGGATTCAGTGCGTTGTTTGTGCGTCCAAGGAGTCGCTGTG
CCGGTACGCAACTAGGCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002161A_C01 KCC002161A_c01
         (439 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC92388.1| hypothetical protein [Oryza sativa (japonica cul...    36  0.11
dbj|BAB63728.1| P0694A04.10 [Oryza sativa (japonica cultivar-gro...    35  0.24
pir||T00037 hypothetical protein KIAA0284 - human (fragment)           35  0.31
dbj|BAA22953.2| KIAA0284 protein [Homo sapiens]                        35  0.31
ref|XP_208766.2| similar to KIAA0284 protein [Homo sapiens]            35  0.31

>dbj|BAC92388.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|35215203|dbj|BAC92555.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 384

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = -2

Query: 276 KTTLRNGPGPANRRTPPCPAATSIGTRQLCLQHKLSSLHSAPRNAGARVRTSRTLGQ*PP 97
           +T L   PGP++ R P  P  T    R+ CL  +   L   P  + +   ++RTLG+  P
Sbjct: 232 RTHLPVPPGPSDHRPPVPPHGTPPNRRRRCLPEERRRLFPPPATSRS-ASSARTLGE--P 288

Query: 96  LVRMPSLTDCCVTSR 52
           L+ +P    C  T+R
Sbjct: 289 LLPLPFPFACIATAR 303

>dbj|BAB63728.1| P0694A04.10 [Oryza sativa (japonica cultivar-group)]
          Length = 237

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 23/79 (29%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
 Frame = -3

Query: 275 KQHSAMDLGPQI------VGPPPVRQPHQSGPGSCVYNTNSARCTARRGMQVRACAPREP 114
           + HS+  L PQI      + PPP      +G G  +Y+  +A  +ARR         R P
Sbjct: 141 RPHSSASLPPQIGAASRPIRPPPPPSTSTAGAGGAIYHAAAAASSARR---------RRP 191

Query: 113 LANSPRSSACLH*RTAASP 57
           L ++P  +   H R    P
Sbjct: 192 LKSAPTRTPSKHRRRRPPP 210

>pir||T00037 hypothetical protein KIAA0284 - human (fragment)
          Length = 1323

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 29/86 (33%), Positives = 35/86 (39%), Gaps = 2/86 (2%)
 Frame = -2

Query: 330 RQVRSARITTSSSRVSHVKTTLRNGPGPANRRTPPCPAATSIGTRQLCLQHKLSSLHSAP 151
           R+ RS   T S S     K   R GP PA+R  P  PA    G R            S P
Sbjct: 359 RKKRSQSFTHSPS--GDPKADKRRGPTPADRDRPSVPAPVQAGGRS-----------SGP 405

Query: 150 RNAGA--RVRTSRTLGQ*PPLVRMPS 79
           + AG+  R +T   LG   P  R P+
Sbjct: 406 QRAGSLKREKTEERLGSPSPASRTPA 431

>dbj|BAA22953.2| KIAA0284 protein [Homo sapiens]
          Length = 1498

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 29/86 (33%), Positives = 35/86 (39%), Gaps = 2/86 (2%)
 Frame = -2

Query: 330 RQVRSARITTSSSRVSHVKTTLRNGPGPANRRTPPCPAATSIGTRQLCLQHKLSSLHSAP 151
           R+ RS   T S S     K   R GP PA+R  P  PA    G R            S P
Sbjct: 359 RKKRSQSFTHSPS--GDPKADKRRGPTPADRDRPSVPAPVQAGGRS-----------SGP 405

Query: 150 RNAGA--RVRTSRTLGQ*PPLVRMPS 79
           + AG+  R +T   LG   P  R P+
Sbjct: 406 QRAGSLKREKTEERLGSPSPASRTPA 431

>ref|XP_208766.2| similar to KIAA0284 protein [Homo sapiens]
          Length = 1677

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 29/86 (33%), Positives = 35/86 (39%), Gaps = 2/86 (2%)
 Frame = -2

Query: 330 RQVRSARITTSSSRVSHVKTTLRNGPGPANRRTPPCPAATSIGTRQLCLQHKLSSLHSAP 151
           R+ RS   T S S     K   R GP PA+R  P  PA    G R            S P
Sbjct: 538 RKKRSQSFTHSPS--GDPKADKRRGPTPADRDRPSVPAPVQAGGRS-----------SGP 584

Query: 150 RNAGA--RVRTSRTLGQ*PPLVRMPS 79
           + AG+  R +T   LG   P  R P+
Sbjct: 585 QRAGSLKREKTEERLGSPSPASRTPA 610



EST assemble image


clone accession position
1 HC090d03_r AV638754 1 429
2 MXL051e04_r BP096035 67 439




Chlamydomonas reinhardtii
Kazusa DNA Research Institute