KCC002160A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002160A_C01 KCC002160A_c01
gtagtattgCTTCGATGCAGCTGAACGCGAGGCTTCATACGCAGCTAAGAGTGTCAGCAG
CTCGGCGACATGCTGCACATTTTTCGCGTGCACGGTCTGTGCATGCATCGCGGGCGCCAT
TCTGCCCACCACTGAAGACCTCAAGCTATGATGAGGCACCAGCAGTGGAGGAACGCGTCC
TAGTAAAACTGGAAAATGATGTCGAGCCAGCTGGGAATTTGAATGCGGATGCGCAGGCTA
CAAATCTCCAAGAAGCAGAGCGCCAGCGCCAGGCGTTCATCATGAACGACACCTGCCGGT
TCCTGGCCACGGACTTGAAGATGTTGTTTGAGAAGGGGGAGATCACGGAGGCGCGCTACA
GCCCTGACATCACATTTGAGGACCCCATCACCAAATACACAAACCGGGAGGGCTACATCT
TCAACATTCGGCTCCTGCGCACGTTCTTCAACATCCAAATTTGACCTCTTCAATGTCGCC
GTGAGCGGACCGGCACACGTCATGGACATGTGGTCGATGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002160A_C01 KCC002160A_c01
         (521 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_197514.2| expressed protein [Arabidopsis thaliana] gi|174...    46  3e-04
gb|AAP82289.1| cystatin domain fetuin-like protein [Xenopus laevis]    35  0.59
gb|AAH43891.1| Similar to fetuin B [Xenopus laevis]                    35  0.59
gb|AAO31610.1| hypothetical histidine-rich protein [Xenopus laevis]    35  0.77
gb|AAH03469.1| Ipo4 protein [Mus musculus] gi|26326489|dbj|BAC26...    33  1.7

>ref|NP_197514.2| expressed protein [Arabidopsis thaliana] gi|17473811|gb|AAL38336.1|
           unknown protein [Arabidopsis thaliana]
           gi|23197728|gb|AAN15391.1| unknown protein [Arabidopsis
           thaliana]
          Length = 378

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 23/59 (38%), Positives = 30/59 (49%)
 Frame = +3

Query: 282 MNDTCRFLATDLKMLFEKGEITEARYSPDITFEDPITKYTNREGYIFNIRLLRTFFNIQ 458
           M +   FL  DL  LF+   I +  Y   + F DPITK+    GY+FNI  L+  F  Q
Sbjct: 61  MEELVGFLYEDLPHLFDDQGIDKTAYDERVKFRDPITKHDTISGYLFNIAFLKNIFTPQ 119

>gb|AAP82289.1| cystatin domain fetuin-like protein [Xenopus laevis]
          Length = 462

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 24/67 (35%), Positives = 26/67 (37%)
 Frame = +2

Query: 272 GVHHERHLPVPGHGLEDVV*EGGDHGGALQP*HHI*GPHHQIHKPGGLHLQHSAPAHVLQ 451
           G HH +H   P H       +G  HG      HH   PHH  H P   H  H        
Sbjct: 308 GRHHHKHRHHPSH-------KGHKHGRR----HHHHHPHHHDHPPHHHHHHHH------H 350

Query: 452 HPNLTSS 472
           HPN TSS
Sbjct: 351 HPNHTSS 357

>gb|AAH43891.1| Similar to fetuin B [Xenopus laevis]
          Length = 462

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 24/67 (35%), Positives = 26/67 (37%)
 Frame = +2

Query: 272 GVHHERHLPVPGHGLEDVV*EGGDHGGALQP*HHI*GPHHQIHKPGGLHLQHSAPAHVLQ 451
           G HH +H   P H       +G  HG      HH   PHH  H P   H  H        
Sbjct: 308 GRHHHKHRHHPSH-------KGHKHGRR----HHHHHPHHHDHPPHHHHHHHH------H 350

Query: 452 HPNLTSS 472
           HPN TSS
Sbjct: 351 HPNHTSS 357

>gb|AAO31610.1| hypothetical histidine-rich protein [Xenopus laevis]
          Length = 465

 Score = 34.7 bits (78), Expect = 0.77
 Identities = 24/67 (35%), Positives = 26/67 (37%)
 Frame = +2

Query: 272 GVHHERHLPVPGHGLEDVV*EGGDHGGALQP*HHI*GPHHQIHKPGGLHLQHSAPAHVLQ 451
           G HH +H   P H       +G  HG      HH   PHH  H P   H  H        
Sbjct: 311 GRHHHKHRHHPSH-------KGHKHGRH----HHHHHPHHHDHPPHHHHHHHH------H 353

Query: 452 HPNLTSS 472
           HPN TSS
Sbjct: 354 HPNHTSS 360

>gb|AAH03469.1| Ipo4 protein [Mus musculus] gi|26326489|dbj|BAC26988.1| unnamed
           protein product [Mus musculus]
          Length = 758

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 22/60 (36%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
 Frame = -3

Query: 207 ARHHFPVLLGRVPPLLV--PHHSLRSSVVGRMAPAMHAQTVHAKNVQHVAELLTLLAAYE 34
           A+ HFP LLG + PLL    H  +R ++ G +A  + A  V     Q +A LL  L   E
Sbjct: 611 AQDHFPKLLGLLLPLLARERHDRVRDNICGALARVLMASPVGKTEPQVLATLLRALPLKE 670



EST assemble image


clone accession position
1 MXL036b04_r BP095118 1 493
2 HC090a10_r AV638730 10 425
3 MX260e04_r BP092890 28 527
4 LCL097f07_r AV631653 90 368




Chlamydomonas reinhardtii
Kazusa DNA Research Institute