KCC002147A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002147A_C02 KCC002147A_c02
CAAAGCAACAAGTGAAGCTTCTCGAATAGCACTGCCTTACAAAGCACAGGCTCTAGCGTC
AGTCTACCCAGCCCTAGTTCGACTTGACTTGCAGAGAGCCATGGCCCTTCGCGAGGTGTC
GCAGAAGCGGGTGCTACCGCTGCTCGCGCAATTCACGCGCGGGTTGAGTGCCAGCGCGAT
GCCCGAGCAGGTCTCGCTTGACGCGAACGCTCCTATCTCGCAGCCGGCGCCGTTTTCCTA
CGTGCCGCCTGGTCGGAACCACCTCTTCGTGCCGGGCCCGGTCAACATCCACGAGCGAGT
GCTGCGCGCGATGCACGTGCCCGGCCAGAACCACCGCGACCCCTGGTTTGCGGAGTTCTA
CAAGGAGTGTCTGGAGGACACCAAGCACATGTACGGCACCAAGGCCGCTACCCCCTTCAT
CTTCCCCGGCACCGGCACTGGAGGCTGGGAGGCTGCGCTCTGTAACACGCTGTCACCCGG
TGACAAGGTCATCTGCTTCCGCTACGGCCTGTTCTCTCACCTGTGGATTGACATGATGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002147A_C02 KCC002147A_c02
         (540 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P55819|SGAA_METEX SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT)       121  7e-27
gb|AAQ56195.1| aminotransferase 2 [Cucumis melo]                      120  1e-26
gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo]            120  1e-26
ref|NP_178969.1| alanine-glyoxylate aminotransferase [Arabidopsi...   117  1e-25
gb|AAQ56193.1| aminotransferase 2 [Cucumis melo]                      116  2e-25

>sp|P55819|SGAA_METEX SERINE--GLYOXYLATE AMINOTRANSFERASE (SGAT)
          Length = 379

 Score =  121 bits (303), Expect = 7e-27
 Identities = 56/96 (58%), Positives = 69/96 (71%)
 Frame = +2

Query: 248 PGRNHLFVPGPVNIHERVLRAMHVPGQNHRDPWFAEFYKECLEDTKHMYGTKAATPFIFP 427
           PGRNHLFVPGP NI +RV+RAM V  ++HR   F    K   EDTK ++G+   T F+FP
Sbjct: 2   PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 61

Query: 428 GTGTGGWEAALCNTLSPGDKVICFRYGLFSHLWIDM 535
            +GTG WE+AL NTL+ GDKV+  R+G FSHLWIDM
Sbjct: 62  ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDM 97

>gb|AAQ56195.1| aminotransferase 2 [Cucumis melo]
          Length = 401

 Score =  120 bits (301), Expect = 1e-26
 Identities = 56/95 (58%), Positives = 69/95 (71%)
 Frame = +2

Query: 248 PGRNHLFVPGPVNIHERVLRAMHVPGQNHRDPWFAEFYKECLEDTKHMYGTKAATPFIFP 427
           PGRNHLFVPGPVNI E+VLRAM+   +++R P      K  LED K ++ T + TPF+FP
Sbjct: 7   PGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSGTPFLFP 66

Query: 428 GTGTGGWEAALCNTLSPGDKVICFRYGLFSHLWID 532
            TGTG WE+AL NTLSPGD+++ F  G FS LWID
Sbjct: 67  TTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWID 101

>gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo]
          Length = 401

 Score =  120 bits (301), Expect = 1e-26
 Identities = 56/95 (58%), Positives = 69/95 (71%)
 Frame = +2

Query: 248 PGRNHLFVPGPVNIHERVLRAMHVPGQNHRDPWFAEFYKECLEDTKHMYGTKAATPFIFP 427
           PGRNHLFVPGPVNI E+VLRAM+   +++R P      K  LED K ++ T + TPF+FP
Sbjct: 7   PGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSGTPFLFP 66

Query: 428 GTGTGGWEAALCNTLSPGDKVICFRYGLFSHLWID 532
            TGTG WE+AL NTLSPGD+++ F  G FS LWID
Sbjct: 67  TTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWID 101

>ref|NP_178969.1| alanine-glyoxylate aminotransferase [Arabidopsis thaliana]
           gi|30678921|ref|NP_849951.1| alanine-glyoxylate
           aminotransferase [Arabidopsis thaliana]
           gi|25287370|pir||T52250 probable alanine-glyoxylate
           transaminase (EC 2.6.1.44) [imported] - Arabidopsis
           thaliana gi|3288821|gb|AAC26854.1| alanine:glyoxylate
           aminotransferase; transaminase [Arabidopsis thaliana]
           gi|4733989|gb|AAD28669.1| alanine-glyoxylate
           aminotransferase [Arabidopsis thaliana]
           gi|12082307|dbj|BAB20811.1| serine glyoxylate
           aminotransferase [Arabidopsis thaliana]
           gi|20465425|gb|AAM20136.1| putative alanine-glyoxylate
           aminotransferase [Arabidopsis thaliana]
           gi|21281089|gb|AAM45058.1| putative alanine-glyoxylate
           aminotransferase [Arabidopsis thaliana]
          Length = 401

 Score =  117 bits (292), Expect = 1e-25
 Identities = 54/95 (56%), Positives = 68/95 (70%)
 Frame = +2

Query: 248 PGRNHLFVPGPVNIHERVLRAMHVPGQNHRDPWFAEFYKECLEDTKHMYGTKAATPFIFP 427
           PGR+HLFVPGPVNI E V+RAM+   +++R P      K  LED K ++ T + TPF+FP
Sbjct: 7   PGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFP 66

Query: 428 GTGTGGWEAALCNTLSPGDKVICFRYGLFSHLWID 532
            TGTG WE+AL NTLSPGD+++ F  G FS LWID
Sbjct: 67  TTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWID 101

>gb|AAQ56193.1| aminotransferase 2 [Cucumis melo]
          Length = 401

 Score =  116 bits (291), Expect = 2e-25
 Identities = 55/95 (57%), Positives = 68/95 (70%)
 Frame = +2

Query: 248 PGRNHLFVPGPVNIHERVLRAMHVPGQNHRDPWFAEFYKECLEDTKHMYGTKAATPFIFP 427
           PGRNHLFVPGPVNI E+VLRAM+   +++R P      K  LED K ++ T + T F+FP
Sbjct: 7   PGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSGTLFLFP 66

Query: 428 GTGTGGWEAALCNTLSPGDKVICFRYGLFSHLWID 532
            TGTG WE+AL NTLSPGD+++ F  G FS LWID
Sbjct: 67  TTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWID 101



EST assemble image


clone accession position
1 MXL100c07_r BP098857 1 399
2 LCL090e11_r AV631228 1 475
3 MXL053e09_r BP096145 5 442
4 HC086c03_r AV638426 6 419
5 LCL053c06_r AV629155 12 540
6 LCL061e02_r AV629585 18 428




Chlamydomonas reinhardtii
Kazusa DNA Research Institute