Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002136A_C01 KCC002136A_c01
(472 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB17629.1| allele:Hd1 [Oryza sativa (indica cultivar-group)] 98 6e-20
dbj|BAB17630.1| allele:Hd1 [Oryza sativa] gi|11094213|dbj|BAB176... 96 2e-19
dbj|BAB17631.1| allele:Hd1 [Oryza sativa] 96 2e-19
ref|NP_186887.1| Zinc finger protein CONSTANS-LIKE 2 (COL2) [Ara... 94 1e-18
gb|AAN09831.1| COL1 protein [Brassica nigra] 92 4e-18
>dbj|BAB17629.1| allele:Hd1 [Oryza sativa (indica cultivar-group)]
Length = 342
Score = 97.8 bits (242), Expect = 6e-20
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Frame = +1
Query: 91 AAAAVVWCQNDKALLCKDCDVRIHTSNAVAARHTRFVPCQGCNKAGAALYCKCDAAHMCE 270
AA +VV+C+ D A LC CD R+H +N VA+RH R C+ C +A AAL C+ DAA +C
Sbjct: 40 AAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACEQAPAALACRADAAALCV 99
Query: 271 AC----HSSNPLAATHETEPVAPLPSV 339
AC HS+NPLA H+ PVAPLP++
Sbjct: 100 ACDVQVHSANPLARRHQRVPVAPLPAI 126
>dbj|BAB17630.1| allele:Hd1 [Oryza sativa] gi|11094213|dbj|BAB17632.1| allele:Hd1
[Oryza sativa]
Length = 407
Score = 95.9 bits (237), Expect = 2e-19
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Frame = +1
Query: 91 AAAAVVWCQNDKALLCKDCDVRIHTSNAVAARHTRFVPCQGCNKAGAALYCKCDAAHMCE 270
AA +VV+C+ D A LC CD R+H +N VA+RH R C+ C +A AAL C+ DAA +C
Sbjct: 40 AAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADAAALCV 99
Query: 271 AC----HSSNPLAATHETEPVAPLPSV 339
AC +S+NPLA H+ PVAPLP++
Sbjct: 100 ACDVQVYSANPLARRHQRVPVAPLPAI 126
Score = 45.1 bits (105), Expect = 4e-04
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Frame = +1
Query: 202 PCQGCNKAGAALYCKCDAAHMCEAC----HSSNPLAATHE 309
PC GC A + +YC+ DAA++C +C H++N +A+ HE
Sbjct: 34 PCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHE 73
>dbj|BAB17631.1| allele:Hd1 [Oryza sativa]
Length = 259
Score = 95.9 bits (237), Expect = 2e-19
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Frame = +1
Query: 91 AAAAVVWCQNDKALLCKDCDVRIHTSNAVAARHTRFVPCQGCNKAGAALYCKCDAAHMCE 270
AA +VV+C+ D A LC CD R+H +N VA+RH R C+ C +A AAL C+ DAA +C
Sbjct: 40 AAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADAAALCV 99
Query: 271 AC----HSSNPLAATHETEPVAPLPSV 339
AC +S+NPLA H+ PVAPLP++
Sbjct: 100 ACDVQVYSANPLARRHQRVPVAPLPAI 126
Score = 45.1 bits (105), Expect = 4e-04
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Frame = +1
Query: 202 PCQGCNKAGAALYCKCDAAHMCEAC----HSSNPLAATHE 309
PC GC A + +YC+ DAA++C +C H++N +A+ HE
Sbjct: 34 PCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHE 73
>ref|NP_186887.1| Zinc finger protein CONSTANS-LIKE 2 (COL2) [Arabidopsis thaliana]
gi|17433030|sp|Q96502|COL2_ARATH Zinc finger protein
CONSTANS-LIKE 2 gi|1507699|gb|AAB67879.1| COL2
[Arabidopsis thaliana] gi|1507701|gb|AAB67880.1| COL2
[Arabidopsis thaliana] gi|6957702|gb|AAF32446.1| COL2
[Arabidopsis thaliana]
gi|10092178|gb|AAG12597.1|AC068900_3 putative
flowering-time gene CONSTANS (COL2); 19155-17969
[Arabidopsis thaliana]
gi|13877773|gb|AAK43964.1|AF370149_1 putative
flowering-time gene CONSTANS protein COL2 [Arabidopsis
thaliana] gi|16323408|gb|AAL15198.1| putative
flowering-time gene CONSTANS protein COL2 [Arabidopsis
thaliana] gi|21618042|gb|AAM67092.1| zinc finger protein
CONSTANS-like 2 [Arabidopsis thaliana]
Length = 347
Score = 93.6 bits (231), Expect = 1e-18
Identities = 44/90 (48%), Positives = 55/90 (60%), Gaps = 5/90 (5%)
Frame = +1
Query: 76 SCVVC-AAAAVVWCQNDKALLCKDCDVRIHTSNAVAARHTRFVPCQGCNKAGAALYCKCD 252
+C C +AA V+C+ D A LC CD R+H +N VA+RH R CQ C A AA CK D
Sbjct: 15 ACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKAD 74
Query: 253 AAHMCEAC----HSSNPLAATHETEPVAPL 330
AA +C AC HS+NPLA H+ P+ PL
Sbjct: 75 AASLCTACDAEIHSANPLARRHQRVPILPL 104
>gb|AAN09831.1| COL1 protein [Brassica nigra]
Length = 344
Score = 91.7 bits (226), Expect = 4e-18
Identities = 41/90 (45%), Positives = 57/90 (62%), Gaps = 5/90 (5%)
Frame = +1
Query: 76 SCVVC-AAAAVVWCQNDKALLCKDCDVRIHTSNAVAARHTRFVPCQGCNKAGAALYCKCD 252
+C C +AA V+C+ D A LC CD +IH +N +A+RH R C+ C +A AA +CK D
Sbjct: 11 ACDTCRSAACTVYCRADSAYLCTSCDAQIHAANRLASRHERVRVCESCERAPAAFFCKAD 70
Query: 253 AAHMCEAC----HSSNPLAATHETEPVAPL 330
AA +C AC HS+NPLA H+ P+ P+
Sbjct: 71 AASLCTACDSQIHSANPLARRHQRVPILPI 100
