KCC002106A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002106A_C01 KCC002106A_c01
GCCAGGGCAACCATACCGTTTAGCCTGCACTAGGCGGGGCAACAAGGATGCGGTCGCTGA
AGCAAATCCTGCGCATCGGCGAGGCTAGCTCGCTCGGTCTGCGCGCGTTCGGCAGCGCTG
CCAAGGATGTAGTGGCTACTGATGCCAACCCTTTCCTGCGCTTCAGCAACCCCCGCCCCA
GCCCCATCGACCACACGCCCCTGCTGAGCACGCTTCCGGAGACCCGGATAACCACGCTGC
CCAACGGCCTGCGCGTGGCCACCGAGGCTATCCCGTTTGCGGAGACCACCACGCTCGGCA
TCTGGATCAACAGCGGCAGCCGCTTTGAGACTGATGCCAACAATGGCGTCGCTCACTTCT
TGGAGCACATTCTCTTCAAGGGCACCAAGAACCGCTCGGTGAAGGAGCTGGAGGTCGAGG
TGGAGAACATGGGCGGCCAGCTGAATGCCTACACGGGCCGTGAGCAGACCTGCTACTATG
CTAAGGTCATGGGCAAGGACGTGGGCAAGGCGGTCAACATCCTGTCCGATATCCTTGACT
GAACTCCAACCTGGATGCCCTGCGCCATCGACAAGGAGCGCGACGTGATTCTGCGCGAGA
TGGAGGAGGTCAACAAGCAGACCTCGGAGCTGGTGTTCGACCACCTGCACGCCACCGCGT
TCCAGTACAGCCCGCTGGGCCGCACCATCCTGGGCCCCGTGGAGAACATCAAGTCCATCA
ACCGCGACCAGCTGGTTGAGTACATGAAGACCCACTACCGCGGnccccgcatggtgctg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002106A_C01 KCC002106A_c01
         (779 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK07827.1|AF297643_1 mitochondrial processing peptidase beta...   268  7e-71
gb|AAK51086.1|AF363285_1 mitochondrial processing peptidase [Avi...   256  2e-67
pir||A48529 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) 55K p...   255  6e-67
emb|CAA56521.1| mitochondrial processing peptidase [Solanum tube...   255  6e-67
ref|NP_850500.1| mitochondrial processing peptidase -related [Ar...   254  1e-66

>gb|AAK07827.1|AF297643_1 mitochondrial processing peptidase beta subunit [Cucumis melo]
          Length = 528

 Score =  268 bits (685), Expect = 7e-71
 Identities = 131/209 (62%), Positives = 165/209 (78%)
 Frame = +3

Query: 153 FLRFSNPRPSPIDHTPLLSTLPETRITTLPNGLRVATEAIPFAETTTLGIWINSGSRFET 332
           FL++ +P P+  DHT +LS  PETR+TTL NGLRVATE+   A T T+G+WI++GSRFET
Sbjct: 72  FLKYGSPHPTITDHTRILSA-PETRVTTLSNGLRVATESNLAARTATVGVWIDAGSRFET 130

Query: 333 DANNGVAHFLEHILFKGTKNRSVKELEVEVENMGGQLNAYTGREQTCYYAKVMGKDVGKA 512
           +  NG AHFLEH++FKGT+ RS ++LE E+ENMGG LNAYT REQT YYAKV+ KDV KA
Sbjct: 131 EETNGTAHFLEHMIFKGTEKRSARQLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVPKA 190

Query: 513 VNILSDILD*TPTWMPCAIDKERDVILREMEEVNKQTSELVFDHLHATAFQYSPLGRTIL 692
           ++IL+DIL     +    I +ERDVILREMEEV  QT E++FDHLHATAFQY+PLGRTIL
Sbjct: 191 LDILADILQ-NSKFDEHRISRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTIL 249

Query: 693 GPVENIKSINRDQLVEYMKTHYRGPRMVL 779
           GP +NI++I +D L  Y++THY  PRMV+
Sbjct: 250 GPAQNIRTITKDHLQSYIQTHYTAPRMVI 278

>gb|AAK51086.1|AF363285_1 mitochondrial processing peptidase [Avicennia marina]
          Length = 527

 Score =  256 bits (655), Expect = 2e-67
 Identities = 127/209 (60%), Positives = 163/209 (77%)
 Frame = +3

Query: 153 FLRFSNPRPSPIDHTPLLSTLPETRITTLPNGLRVATEAIPFAETTTLGIWINSGSRFET 332
           FLR+++P P+   HT +LS  P TR+TTLPNGLR+ATE+   + T T+G++I++GSRFE+
Sbjct: 70  FLRYNSPHPTVDSHTEILSA-PLTRVTTLPNGLRIATESTLVSTTATVGVFIDAGSRFES 128

Query: 333 DANNGVAHFLEHILFKGTKNRSVKELEVEVENMGGQLNAYTGREQTCYYAKVMGKDVGKA 512
           + +NG AHFLEH++FKGT+ R+ +ELE E+ENMGG LNAYT REQT YYAKVM KDV +A
Sbjct: 129 EESNGTAHFLEHMIFKGTERRNARELEEEIENMGGHLNAYTSREQTTYYAKVMDKDVPRA 188

Query: 513 VNILSDILD*TPTWMPCAIDKERDVILREMEEVNKQTSELVFDHLHATAFQYSPLGRTIL 692
           ++ILSDIL     +    I +ERDVILREMEEV  QT E++FDHLHA+AFQY+PLGRTIL
Sbjct: 189 LDILSDILQ-NSRFDEQRIIRERDVILREMEEVEGQTEEVIFDHLHASAFQYTPLGRTIL 247

Query: 693 GPVENIKSINRDQLVEYMKTHYRGPRMVL 779
           GP ENIK I ++ L  Y+ THY  PR V+
Sbjct: 248 GPAENIKKIGKEHLRTYISTHYTAPRTVV 276

>pir||A48529 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) 55K protein
           precursor - potato gi|410633|gb|AAB28041.1| cytochrome c
           reductase-processing peptidase subunit I, MPP subunit I,
           P55 [potatoes, var. Marfona, tuber, Peptide
           Mitochondrial, 534 aa]
          Length = 534

 Score =  255 bits (651), Expect = 6e-67
 Identities = 125/209 (59%), Positives = 161/209 (76%)
 Frame = +3

Query: 153 FLRFSNPRPSPIDHTPLLSTLPETRITTLPNGLRVATEAIPFAETTTLGIWINSGSRFET 332
           FLR+++P P+  DHT +LS  PET++TTLPNGLR+ATE+   ++T T+G+WI++GSRFET
Sbjct: 77  FLRYNSPDPTVADHTSILSA-PETKVTTLPNGLRIATESNLSSQTATVGVWIDAGSRFET 135

Query: 333 DANNGVAHFLEHILFKGTKNRSVKELEVEVENMGGQLNAYTGREQTCYYAKVMGKDVGKA 512
           + NNGVAHFLEH++FKGT+ R ++ LE E+ENMGG LNAYT REQT Y+AKV+G DV KA
Sbjct: 136 EENNGVAHFLEHMIFKGTEKRPIRALEEEIENMGGHLNAYTSREQTTYFAKVLGCDVPKA 195

Query: 513 VNILSDILD*TPTWMPCAIDKERDVILREMEEVNKQTSELVFDHLHATAFQYSPLGRTIL 692
           V+IL DIL          I +ER VILREMEEV KQ  E++FD LH TAFQY+PLGRTIL
Sbjct: 196 VDILGDILQ-NSLLEEDKIIRERSVILREMEEVEKQPEEVIFDQLHTTAFQYTPLGRTIL 254

Query: 693 GPVENIKSINRDQLVEYMKTHYRGPRMVL 779
           GP +NI+ + R  + +Y+ THY   RMV+
Sbjct: 255 GPAQNIEKMTRAHIQDYISTHYGAHRMVI 283

>emb|CAA56521.1| mitochondrial processing peptidase [Solanum tuberosum]
          Length = 534

 Score =  255 bits (651), Expect = 6e-67
 Identities = 125/209 (59%), Positives = 161/209 (76%)
 Frame = +3

Query: 153 FLRFSNPRPSPIDHTPLLSTLPETRITTLPNGLRVATEAIPFAETTTLGIWINSGSRFET 332
           FLR+++P P+  DHT +LS  PET++TTLPNGLR+ATE+   ++T T+G+WI++GSRFET
Sbjct: 77  FLRYNSPDPTVADHTSILSA-PETKVTTLPNGLRIATESNLSSQTATVGVWIDAGSRFET 135

Query: 333 DANNGVAHFLEHILFKGTKNRSVKELEVEVENMGGQLNAYTGREQTCYYAKVMGKDVGKA 512
           + NNGVAHFLEH++FKGT+ R ++ LE E+ENMGG LNAYT REQT Y+AKV+G DV KA
Sbjct: 136 EENNGVAHFLEHMIFKGTEKRPIRALEEEIENMGGHLNAYTSREQTTYFAKVLGCDVPKA 195

Query: 513 VNILSDILD*TPTWMPCAIDKERDVILREMEEVNKQTSELVFDHLHATAFQYSPLGRTIL 692
           V+IL DIL          I +ER VILREMEEV KQ  E++FD LH TAFQY+PLGRTIL
Sbjct: 196 VDILGDILQ-NSLLEEDKIIRERSVILREMEEVEKQPEEVIFDQLHTTAFQYTPLGRTIL 254

Query: 693 GPVENIKSINRDQLVEYMKTHYRGPRMVL 779
           GP +NI+ + R  + +Y+ THY   RMV+
Sbjct: 255 GPAQNIEKMTRAHIQDYISTHYGAHRMVI 283

>ref|NP_850500.1| mitochondrial processing peptidase -related [Arabidopsis thaliana]
          Length = 535

 Score =  254 bits (649), Expect = 1e-66
 Identities = 124/209 (59%), Positives = 162/209 (77%)
 Frame = +3

Query: 153 FLRFSNPRPSPIDHTPLLSTLPETRITTLPNGLRVATEAIPFAETTTLGIWINSGSRFET 332
           FL++++P P    H  +LS  PETR+TTLPNGLRVATE+   A+T T+G+WI++GSRFE+
Sbjct: 75  FLKYASPHPILASHNHILSA-PETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFES 133

Query: 333 DANNGVAHFLEHILFKGTKNRSVKELEVEVENMGGQLNAYTGREQTCYYAKVMGKDVGKA 512
           D  NG AHFLEH++FKGT  R+V+ LE E+E++GG LNAYT REQT YYAKV+  +V +A
Sbjct: 134 DETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQA 193

Query: 513 VNILSDILD*TPTWMPCAIDKERDVILREMEEVNKQTSELVFDHLHATAFQYSPLGRTIL 692
           +++L+DIL     +    I++ERDVILREM+EV  QT E+V DHLHATAFQY+PLGRTIL
Sbjct: 194 LDVLADILQ-NSKFEEQRINRERDVILREMQEVEGQTDEVVLDHLHATAFQYTPLGRTIL 252

Query: 693 GPVENIKSINRDQLVEYMKTHYRGPRMVL 779
           GP +N+KSI R+ L  Y+KTHY   RMV+
Sbjct: 253 GPAQNVKSITREDLQNYIKTHYTASRMVI 281



EST assemble image


clone accession position
1 LCL045a07_r AV628644 1 509
2 HCL039b06_r AV641711 3 524
3 MX216e11_r BP089959 3 402
4 HCL019c07_r AV640617 3 216
5 LCL080c06_r AV630527 3 483
6 MXL098g03_r BP098765 5 506
7 HC073f11_r AV637483 10 424
8 LC077c12_r AV624406 10 480
9 MXL055h10_r BP096283 12 469
10 MXL068e12_r BP097004 24 424
11 HCL081a12_r AV644064 24 545
12 HCL044d07_r AV642045 129 454
13 MXL084d11_r BP097973 227 595
14 HCL056b10_r AV642696 288 792




Chlamydomonas reinhardtii
Kazusa DNA Research Institute