Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002089A_C01 KCC002089A_c01
(507 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680467.1| zinc finger (C3HC4-type RING finger) protein fa... 32 3.5
dbj|BAC42427.1| unknown protein [Arabidopsis thaliana] gi|290290... 32 3.5
pir||T05901 hypothetical protein F6H11.200 - Arabidopsis thalian... 32 3.5
ref|XP_238021.2| similar to actin filament associated protein; a... 32 4.5
ref|ZP_00045112.1| hypothetical protein [Magnetococcus sp. MC-1] 32 4.5
>ref|NP_680467.1| zinc finger (C3HC4-type RING finger) protein family [Arabidopsis
thaliana]
Length = 717
Score = 32.3 bits (72), Expect = 3.5
Identities = 28/124 (22%), Positives = 51/124 (40%), Gaps = 7/124 (5%)
Frame = -1
Query: 498 SFPKCGASGRLGPGSNPMTVSKQSACAMKFKPTRLHQQPNSGHTV----CEPPR---NPS 340
S P+ + G G G + + ++ P +LH + S T P+ NPS
Sbjct: 49 STPRLRSRGGSGTGCRSSASTSVTIPSLPTSP-KLHCRTTSNATPRTSNSSSPKFFSNPS 107
Query: 339 QSSNNERLSPQNNRRLTHQKPTLQPRALVSVSCCICLHLLPASKKNA*AVLLRAKCAEEN 160
++ S Q ++ + TL S C ICL + +++ N+ A + A+C+
Sbjct: 108 SPKSSSSSSSQGGGGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSF 167
Query: 159 QTAC 148
+C
Sbjct: 168 HLSC 171
>dbj|BAC42427.1| unknown protein [Arabidopsis thaliana] gi|29029032|gb|AAO64895.1|
At5g65683 [Arabidopsis thaliana]
Length = 717
Score = 32.3 bits (72), Expect = 3.5
Identities = 28/124 (22%), Positives = 51/124 (40%), Gaps = 7/124 (5%)
Frame = -1
Query: 498 SFPKCGASGRLGPGSNPMTVSKQSACAMKFKPTRLHQQPNSGHTV----CEPPR---NPS 340
S P+ + G G G + + ++ P +LH + S T P+ NPS
Sbjct: 49 STPRLRSRGGSGTGCRSSASTSVTIPSLPTSP-KLHCRTTSNATPRTSNSSSPKFFSNPS 107
Query: 339 QSSNNERLSPQNNRRLTHQKPTLQPRALVSVSCCICLHLLPASKKNA*AVLLRAKCAEEN 160
++ S Q ++ + TL S C ICL + +++ N+ A + A+C+
Sbjct: 108 SPKSSSSSSSQGGGGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSF 167
Query: 159 QTAC 148
+C
Sbjct: 168 HLSC 171
>pir||T05901 hypothetical protein F6H11.200 - Arabidopsis thaliana
gi|2827718|emb|CAA16691.1| retrotransposon - like
protein [Arabidopsis thaliana]
gi|10177325|dbj|BAB10674.1| copia-like retroelement pol
polyprotein-like [Arabidopsis thaliana]
Length = 1021
Score = 32.3 bits (72), Expect = 3.5
Identities = 28/124 (22%), Positives = 51/124 (40%), Gaps = 7/124 (5%)
Frame = -1
Query: 498 SFPKCGASGRLGPGSNPMTVSKQSACAMKFKPTRLHQQPNSGHTV----CEPPR---NPS 340
S P+ + G G G + + ++ P +LH + S T P+ NPS
Sbjct: 353 STPRLRSRGGSGTGCRSSASTSVTIPSLPTSP-KLHCRTTSNATPRTSNSSSPKFFSNPS 411
Query: 339 QSSNNERLSPQNNRRLTHQKPTLQPRALVSVSCCICLHLLPASKKNA*AVLLRAKCAEEN 160
++ S Q ++ + TL S C ICL + +++ N+ A + A+C+
Sbjct: 412 SPKSSSSSSSQGGGGVSLLRATLLLNKSNSSRCAICLQRVNSNQSNSTAAIFTAECSHSF 471
Query: 159 QTAC 148
+C
Sbjct: 472 HLSC 475
>ref|XP_238021.2| similar to actin filament associated protein; actin
filament-associated protein, 110 kDa [Rattus norvegicus]
Length = 1110
Score = 32.0 bits (71), Expect = 4.5
Identities = 31/143 (21%), Positives = 53/143 (36%), Gaps = 14/143 (9%)
Frame = -1
Query: 468 LGPGSNPMTVSKQSACA--------------MKFKPTRLHQQPNSGHTVCEPPRNPSQSS 331
LGPG +P +S + C+ + TR++ + S + + + S S
Sbjct: 183 LGPGKSPEYISSHNGCSPAQSIVDGYYEDADSSYPTTRMNGESKSSYNDSDA-MSSSYES 241
Query: 330 NNERLSPQNNRRLTHQKPTLQPRALVSVSCCICLHLLPASKKNA*AVLLRAKCAEENQTA 151
+E + R+ HQ P+ + + C IC LL KK + +E Q
Sbjct: 242 YDEEEEEEKGRQPKHQWPSEEASMHLVRDCRICAFLL--RKKRFGQWAKQLTVIKEEQLL 299
Query: 150 CY*TKMPENVQGAYLLESCSCRY 82
CY + L+ C+ Y
Sbjct: 300 CYKSSKDRQPHLRLPLDVCTVVY 322
>ref|ZP_00045112.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 618
Score = 32.0 bits (71), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 360 HTPCAHCWVVDVVVWA*ISWH 422
+ PC HC V+VWA + WH
Sbjct: 233 YVPCPHCGEFQVLVWAQVKWH 253
