Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002086A_C01 KCC002086A_c01
(507 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL59040.1|AC087182_23 putative thioredoxin-like U5 small rib... 127 8e-29
ref|NP_196446.1| YLS8, Dim1 homolog [Arabidopsis thaliana] gi|10... 125 2e-28
gb|AAM61612.1| putative thioredoxin-like U5 small ribonucleoprot... 124 9e-28
ref|NP_006692.1| similar to S. pombe dim1+ [Homo sapiens] gi|133... 121 4e-27
gb|AAB81951.1| Dim1p homolog [Homo sapiens] 121 4e-27
>gb|AAL59040.1|AC087182_23 putative thioredoxin-like U5 small ribonucleoprotein particle
protein [Oryza sativa] gi|31432762|gb|AAP54355.1|
putative thioredoxin-like U5 small ribonucleoprotein
particle protein [Oryza sativa (japonica
cultivar-group)] gi|33146577|dbj|BAC79773.1| putative
dim1p [Oryza sativa (japonica cultivar-group)]
Length = 142
Score = 127 bits (319), Expect = 8e-29
Identities = 60/73 (82%), Positives = 66/73 (90%)
Frame = +3
Query: 288 MSYLLPHLRSGYAVDQAILAEEDRVVIIRFGHDWEPNCMQMDEVLAGVADQIKNFACTYL 467
MSYLLPHL SG+AVDQAILAEE+R+VIIRFGHDW+ CMQMDEVLA VA+ IKNFA YL
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLAAVAETIKNFAVIYL 60
Query: 468 VDISEVPDFNTMY 506
VDI+EVPDFNTMY
Sbjct: 61 VDITEVPDFNTMY 73
>ref|NP_196446.1| YLS8, Dim1 homolog [Arabidopsis thaliana]
gi|10178271|emb|CAC08329.1| putative protein
[Arabidopsis thaliana]
gi|11692866|gb|AAG40036.1|AF324685_1 AT5g08290
[Arabidopsis thaliana]
gi|11908020|gb|AAG41439.1|AF326857_1 unknown protein
[Arabidopsis thaliana]
gi|12642840|gb|AAK00362.1|AF339680_1 unknown protein
[Arabidopsis thaliana] gi|13122294|dbj|BAB32888.1| Dim1
homolog [Arabidopsis thaliana]
gi|14030633|gb|AAK52991.1|AF375407_1 AT5g08290/F8L15_20
[Arabidopsis thaliana] gi|17978897|gb|AAL47418.1|
AT5g08290/F8L15_20 [Arabidopsis thaliana]
Length = 142
Score = 125 bits (315), Expect = 2e-28
Identities = 58/73 (79%), Positives = 66/73 (89%)
Frame = +3
Query: 288 MSYLLPHLRSGYAVDQAILAEEDRVVIIRFGHDWEPNCMQMDEVLAGVADQIKNFACTYL 467
MSYLLPHL SG+AVDQ+ILAEE+R+V+IRFGHDW+ CMQMDEVLA VA+ IKNFA YL
Sbjct: 1 MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
Query: 468 VDISEVPDFNTMY 506
VDI+EVPDFNTMY
Sbjct: 61 VDITEVPDFNTMY 73
>gb|AAM61612.1| putative thioredoxin-like U5 small ribonucleoprotein particle
protein [Arabidopsis thaliana]
Length = 142
Score = 124 bits (310), Expect = 9e-28
Identities = 57/73 (78%), Positives = 65/73 (88%)
Frame = +3
Query: 288 MSYLLPHLRSGYAVDQAILAEEDRVVIIRFGHDWEPNCMQMDEVLAGVADQIKNFACTYL 467
MSYLLPHL SG+AVDQ+ILAEE+R+V+IRFGHDW+ CMQMDEVLA A+ IKNFA YL
Sbjct: 1 MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASFAETIKNFAVIYL 60
Query: 468 VDISEVPDFNTMY 506
VDI+EVPDFNTMY
Sbjct: 61 VDITEVPDFNTMY 73
>ref|NP_006692.1| similar to S. pombe dim1+ [Homo sapiens]
gi|13384656|ref|NP_079575.1| dim1 [Mus musculus]
gi|27679028|ref|XP_214528.1| similar to dim1 [Rattus
norvegicus] gi|37545273|ref|XP_351170.1| similar to dim1
[Homo sapiens] gi|6225270|sp|O14834|DIM1_HUMAN
Spliceosomal U5 snRNP-specific 15 kDa protein (DIM1
protein homolog) (Thioredoxin-like U5 snRNP protein
U5-15kD) gi|6730460|pdb|1QGV|A Chain A, Human
Spliceosomal Protein U5-15kd gi|2565275|gb|AAB81950.1|
Dim1p homolog [Homo sapiens]
gi|6572636|gb|AAF17332.1|AF146373_1 thioredoxin-like U5
snRNP protein U5-15kD [Homo sapiens]
gi|12654441|gb|AAH01046.1| Similar to S. pombe dim1+
[Homo sapiens] gi|12835058|dbj|BAB23137.1| unnamed
protein product [Mus musculus]
gi|12840811|dbj|BAB24966.1| unnamed protein product [Mus
musculus] gi|17939455|gb|AAH19272.1| Similar to S. pombe
dim1+ [Homo sapiens] gi|21595023|gb|AAH31634.1|
Dim1-pending protein [Mus musculus]
Length = 142
Score = 121 bits (304), Expect = 4e-27
Identities = 53/73 (72%), Positives = 65/73 (88%)
Frame = +3
Query: 288 MSYLLPHLRSGYAVDQAILAEEDRVVIIRFGHDWEPNCMQMDEVLAGVADQIKNFACTYL 467
MSY+LPHL +G+ VDQAIL+EEDRVV+IRFGHDW+P CM+MDEVL +A+++KNFA YL
Sbjct: 1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
Query: 468 VDISEVPDFNTMY 506
VDI+EVPDFN MY
Sbjct: 61 VDITEVPDFNKMY 73
>gb|AAB81951.1| Dim1p homolog [Homo sapiens]
Length = 91
Score = 121 bits (304), Expect = 4e-27
Identities = 53/73 (72%), Positives = 65/73 (88%)
Frame = +3
Query: 288 MSYLLPHLRSGYAVDQAILAEEDRVVIIRFGHDWEPNCMQMDEVLAGVADQIKNFACTYL 467
MSY+LPHL +G+ VDQAIL+EEDRVV+IRFGHDW+P CM+MDEVL +A+++KNFA YL
Sbjct: 1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60
Query: 468 VDISEVPDFNTMY 506
VDI+EVPDFN MY
Sbjct: 61 VDITEVPDFNKMY 73
