KCC002075A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002075A_C01 KCC002075A_c01
gggcagctatacctcAAAGGCAAATCAGAACACGTACATGCAGTACCGGTTTCCTATAGA
AATGATGTGGAGAAAGCTTCCGCAAGACGGCTCTGTACCCATCGATCGCTCCAGTCACAG
CATCACCGTTATCGGCAATAAGGTCTACCTGTTCGGTGGCGAGCACGACCCCCGCGTGCC
TGTGGGCAATGAGCTGTATGAGTATGACATGGCGACGGGCACCTGGCGGGTGGTGGAGGC
CAAGGGGGAGGCGCCCCCGCCCCGTGTGGCACACGCAGCTGCGGCGGTGGGGAGCACCTT
GTACGTCTTCGGCGGCAGGAACGGCCTGGAGATGGGCGAGGGCGCCTCCAACCAGCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002075A_C01 KCC002075A_c01
         (358 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566316.1| Kelch repeats protein family [Arabidopsis thali...   111  3e-24
gb|AAM63074.1| contains similarity to jasmonate inducible protei...    97  4e-20
ref|NP_568692.1| Kelch repeats protein family [Arabidopsis thali...    97  6e-20
dbj|BAB82454.1| D-protein [Hordeum vulgare]                            95  3e-19
gb|AAF25385.1|AF214574_1 myrosinase-binding protein-like protein...    79  2e-14

>ref|NP_566316.1| Kelch repeats protein family [Arabidopsis thaliana]
           gi|6466955|gb|AAF13090.1|AC009176_17 unknown protein
           [Arabidopsis thaliana]
           gi|6648184|gb|AAF21182.1|AC013483_6 unknown protein
           [Arabidopsis thaliana]
           gi|11692832|gb|AAG40019.1|AF324668_1 MLP3.17
           [Arabidopsis thaliana]
           gi|11993873|gb|AAG42920.1|AF329503_1 unknown protein
           [Arabidopsis thaliana] gi|14517448|gb|AAK62614.1|
           AT3g07720/F17A17_6 [Arabidopsis thaliana]
           gi|21280883|gb|AAM44920.1| unknown protein [Arabidopsis
           thaliana] gi|23507767|gb|AAN38687.1| At3g07720/F17A17_6
           [Arabidopsis thaliana]
          Length = 329

 Score =  111 bits (277), Expect = 3e-24
 Identities = 51/90 (56%), Positives = 65/90 (71%)
 Frame = +2

Query: 53  PIEMMWRKLPQDGSVPIDRSSHSITVIGNKVYLFGGEHDPRVPVGNELYEYDMATGTWRV 232
           P+E  W +L Q G+ P  RSSH+I ++GNK+Y FGGE  PRVPV N+LY +D+ T TW +
Sbjct: 5   PMEGKWVQLKQKGTGPGARSSHAIALVGNKMYAFGGEFQPRVPVDNQLYVFDLETQTWSI 64

Query: 233 VEAKGEAPPPRVAHAAAAVGSTLYVFGGRN 322
            EA G+APPPRV  A AAVG  +Y FGGR+
Sbjct: 65  QEASGDAPPPRVGVAMAAVGPIIYFFGGRD 94

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +2

Query: 56  IEMMWRKLPQDGSVPIDRSSHSITVIGNK---VYLFGGEHDPRVPVGNELYEYDMATGTW 226
           ++  W K P  G     R    + V+  K   VY F GE        ++++ +D+A G W
Sbjct: 159 VDQKWIKFPSPGEACRGRGGPGLEVVQGKIWVVYGFAGEE------ADDVHCFDIAKGEW 212

Query: 227 RVVEAKGEAPPPRVAHAAAAVGSTLYVFGG 316
           + VE KGE P  R   + A VG  + + GG
Sbjct: 213 KEVETKGEKPSARSVFSTAVVGKQILISGG 242

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 29/89 (32%), Positives = 41/89 (45%), Gaps = 1/89 (1%)
 Frame = +2

Query: 68  WRKLPQDGSVPIDRSSHSITVIGNKVYLFGG-EHDPRVPVGNELYEYDMATGTWRVVEAK 244
           W+ L    + P +RS HSIT     VY+FGG   D R+   N+L+ Y++    W    + 
Sbjct: 113 WKLLSSGETGPQNRSYHSITADSQNVYVFGGCGVDGRL---NDLWAYNVVDQKWIKFPSP 169

Query: 245 GEAPPPRVAHAAAAVGSTLYVFGGRNGLE 331
           GEA   R       V   ++V  G  G E
Sbjct: 170 GEACRGRGGPGLEVVQGKIWVVYGFAGEE 198

 Score = 36.6 bits (83), Expect = 0.092
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
 Frame = +2

Query: 68  WRKLPQDGSVPIDRSSHSITVIGNKVYLFGGEHDP----RVPVG---NELYEYDMATGTW 226
           W+++   G  P  RS  S  V+G ++ + GGE DP     +  G    + Y  D  T  W
Sbjct: 212 WKEVETKGEKPSARSVFSTAVVGKQILISGGEIDPSDLGHMGAGCFTGDAYGLDTETLEW 271

Query: 227 RVVE---AKGEAPPPRVAHAAAAVGST-----LYVFGGRN 322
           R  E      E P PR    A A GS      L V+GG +
Sbjct: 272 RKWEDGVGSVEHPGPR-GWCAFAAGSRDGKQGLLVYGGNS 310

>gb|AAM63074.1| contains similarity to jasmonate inducible protein [Arabidopsis
           thaliana]
          Length = 326

 Score = 97.4 bits (241), Expect = 4e-20
 Identities = 47/107 (43%), Positives = 66/107 (60%), Gaps = 6/107 (5%)
 Frame = +2

Query: 53  PIEMMWRKLPQDGSVPIDRSSHSITVIGNKVYLFGGEHDPRVPVGNELYEYDMATGTWRV 232
           P+E  W K+ Q G+ P  RSSH++TV+GNKVY FGGE  P + + N+LY +D+ T  W +
Sbjct: 3   PVENKWLKVGQKGAGPGARSSHAMTVVGNKVYCFGGELKPTIHIDNDLYVFDLGTQEWSI 62

Query: 233 VEAKGEAPPPRVAHAAAAVGSTLYVFGGR------NGLEMGEGASNQ 355
             A GEAP P    +   +GST+YV+GGR      NGL   +  +N+
Sbjct: 63  APATGEAPFPCFGVSMVTIGSTIYVYGGRDDKRRYNGLHSYDTETNE 109

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 32/119 (26%), Positives = 54/119 (44%), Gaps = 8/119 (6%)
 Frame = +2

Query: 11  TSKANQNTYMQYRFPIEMMWRKLPQDGSVPIDRSSHSITVIGNKVY-LFGGEHDPRVPVG 187
           T+K   NT   Y   ++  W + P  G     R +  + V+  +++ LFG +       G
Sbjct: 142 TAKGRVNTLHAYDV-VDQKWVEYPAAGEACKGRGAPGLVVVEGRIWVLFGFD-------G 193

Query: 188 NELYE---YDMATGTWRVVEAKGEAPPPRVAHAAAAVGSTLYVFGGRNG----LEMGEG 343
           NEL +   +D+A+  W+ VE  G+ P  R    A + G  + ++GG       + MG G
Sbjct: 194 NELGDIHCFDLASEQWKAVETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMGAG 252

>ref|NP_568692.1| Kelch repeats protein family [Arabidopsis thaliana]
           gi|16649165|gb|AAL24434.1| Unknown protein [Arabidopsis
           thaliana] gi|20148581|gb|AAM10181.1| unknown protein
           [Arabidopsis thaliana]
          Length = 326

 Score = 97.1 bits (240), Expect = 6e-20
 Identities = 47/107 (43%), Positives = 66/107 (60%), Gaps = 6/107 (5%)
 Frame = +2

Query: 53  PIEMMWRKLPQDGSVPIDRSSHSITVIGNKVYLFGGEHDPRVPVGNELYEYDMATGTWRV 232
           P+E  W K+ Q G+ P  RSSH++TV+GNKVY FGGE  P + + N+LY +D+ T  W +
Sbjct: 3   PVENKWLKVGQKGAGPGARSSHAMTVVGNKVYCFGGELKPTIHIDNDLYVFDLETQEWSI 62

Query: 233 VEAKGEAPPPRVAHAAAAVGSTLYVFGGR------NGLEMGEGASNQ 355
             A GEAP P    +   +GST+YV+GGR      NGL   +  +N+
Sbjct: 63  APATGEAPFPCFGVSMVTIGSTIYVYGGRDDKRRYNGLHSYDTETNE 109

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
 Frame = +2

Query: 2   GSYTSKANQNTYMQYRFPIEMMWRKLPQDGSVPIDRSSHSITVIGNKVY-LFGGEHDPRV 178
           G  T+K   NT   Y   ++  W + P  G     R +  + V+  +++ LFG +     
Sbjct: 139 GGVTAKGRVNTLHAYDV-VDQKWVEYPAAGEACKGRGAPGLVVVEGRIWVLFGFD----- 192

Query: 179 PVGNELYE---YDMATGTWRVVEAKGEAPPPRVAHAAAAVGSTLYVFGGRNG----LEMG 337
             GNEL +   +D+A+  W+ VE  G+ P  R    A + G  + ++GG       + MG
Sbjct: 193 --GNELGDIHCFDLASEQWKAVETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMG 250

Query: 338 EG 343
            G
Sbjct: 251 AG 252

>dbj|BAB82454.1| D-protein [Hordeum vulgare]
          Length = 327

 Score = 94.7 bits (234), Expect = 3e-19
 Identities = 42/85 (49%), Positives = 57/85 (66%)
 Frame = +2

Query: 68  WRKLPQDGSVPIDRSSHSITVIGNKVYLFGGEHDPRVPVGNELYEYDMATGTWRVVEAKG 247
           W  L Q G+ P  RSSH+IT++G   Y FGGE  PR+PV N +Y +D+   +W  ++A G
Sbjct: 8   WILLEQKGAGPGARSSHAITLVGGTAYSFGGEFTPRLPVDNTMYAFDLKAQSWSALDAAG 67

Query: 248 EAPPPRVAHAAAAVGSTLYVFGGRN 322
           E PPPRV    A+VG T++VFGGR+
Sbjct: 68  EVPPPRVGVTMASVGGTVFVFGGRD 92

 Score = 53.9 bits (128), Expect = 6e-07
 Identities = 29/84 (34%), Positives = 43/84 (50%), Gaps = 1/84 (1%)
 Frame = +2

Query: 68  WRKLPQDGSVPIDRSSHSITVIGNKVYL-FGGEHDPRVPVGNELYEYDMATGTWRVVEAK 244
           W +LP  G+    R    +     KV++ +G   D  +   ++++ YD ATG W VV+  
Sbjct: 163 WEELPSPGAACPPRGGPGLAFADGKVWVVYGFSGDAEL---DDVHSYDPATGEWAVVDTT 219

Query: 245 GEAPPPRVAHAAAAVGSTLYVFGG 316
           G+ P PR    AA VG  + VFGG
Sbjct: 220 GDKPTPRSVLCAAGVGKHVVVFGG 243

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 30/89 (33%), Positives = 44/89 (48%), Gaps = 3/89 (3%)
 Frame = +2

Query: 68  WRKLPQDGSVPIDRSSHSITVIG--NKVYLFGG-EHDPRVPVGNELYEYDMATGTWRVVE 238
           W  L      P  RS HS+   G  ++VY+FGG  +  R+   N+L+ YD+A G W  + 
Sbjct: 111 WTLLSSGDDGPPHRSYHSMVADGEGSRVYVFGGCGNAGRL---NDLWAYDVAAGRWEELP 167

Query: 239 AKGEAPPPRVAHAAAAVGSTLYVFGGRNG 325
           + G A PPR     A     ++V  G +G
Sbjct: 168 SPGAACPPRGGPGLAFADGKVWVVYGFSG 196

 Score = 37.0 bits (84), Expect = 0.070
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 221 TWRVVEAKGEAPPPRVAHAAAAVGSTLYVFGG 316
           TW ++E KG  P  R +HA   VG T Y FGG
Sbjct: 7   TWILLEQKGAGPGARSSHAITLVGGTAYSFGG 38

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
 Frame = +2

Query: 68  WRKLPQDGSVPIDRSSHSITVIGNKVYLFGGEHDP----RVPVGN---ELYEYDMATGTW 226
           W  +   G  P  RS      +G  V +FGGE DP     +  G    E +  D  TG W
Sbjct: 213 WAVVDTTGDKPTPRSVLCAAGVGKHVVVFGGEVDPSDLGHLGAGKFSAEAFVLDTDTGAW 272

Query: 227 RVVE--AKGEAPPPR--VAHAAAAVGST--LYVFGGRN 322
             ++    G  P PR   A +A A+     + V+GG +
Sbjct: 273 ARLDDAGSGHHPGPRGWCAFSAGALDGRRGMLVYGGNS 310

>gb|AAF25385.1|AF214574_1 myrosinase-binding protein-like protein [Arabidopsis thaliana]
          Length = 470

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
 Frame = +2

Query: 68  WRKLPQDGSVPIDRSSHSITVIGNKVYLFGGEHDPRVPVGNELYEYDMATGTWRVVEAKG 247
           W K+ Q G  P  R SH I  +GNK+Y FGGE  P  P+   LY +D+ T TW +  A G
Sbjct: 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG 212

Query: 248 EAPP-PRVAHAAAAVGSTLYVFGGRNGLEMGEG 343
           + P    +     +VGSTLYVFGGR+      G
Sbjct: 213 DVPHLSCLGVRMVSVGSTLYVFGGRDASRQYNG 245

 Score = 38.1 bits (87), Expect = 0.032
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +2

Query: 218 GTWRVVEAKGEAPPPRVAHAAAAVGSTLYVFGG 316
           G W  VE KGE P  R +H  A VG+ +Y FGG
Sbjct: 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGG 183

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
 Frame = +2

Query: 38  MQYRFPIEMMWRKLPQDGSVPIDRSSHSITVIGNKVYLFGGE--HDPRVPVG-----NEL 196
           + Y  P++  W ++   G  P +RS  +   +G  + +FGGE   DP   VG     +  
Sbjct: 345 VHYYDPVQDKWTQVETFGVRPSERSVFASAALGKHIVIFGGEIAMDPLAHVGPGQLTDGT 404

Query: 197 YEYDMATGTW-RVVEAKGEAPPPRVAHAAAAVGSTLYVFGGRNGLEMGEG 343
           +  D  T  W R+ +  GE   P    +     ST     G+ GL M  G
Sbjct: 405 FALDTETLQWERLDKFGGEEETP---SSRGWTASTTATIDGKKGLVMHGG 451



EST assemble image


clone accession position
1 HC061f09_r AV636600 1 358
2 LC005a09_r AV619199 16 203




Chlamydomonas reinhardtii
Kazusa DNA Research Institute