KCC002070A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002070A_C01 KCC002070A_c01
gttaaagttacgaatgattcCTAATCTTTTCCGTCAAAGAATTCAGCCGCTCCGACACAC
GATGCACACCCTCAGCCAAACCTCGAGCCGGGCGACCCTCTCTGCTCGGCAAGGACGCAA
AGCTGTTGCTCTCGGCAGCCTGCCGAAGCCCGTGGTGGCTGCCCGTGTGCCGGTGGCGTC
GCCGGTGTCGCAGCGCGGAGCTCCGGGCGTGACGTGTCGCCGGAGCGTCATTAGCCATGG
AAAGGTGGAGAAGATCTCGGGCGAGCAGCTGGAGGTTGCCATCGCCTCTCGCGATACAAC
TCTAATTGTCGACTTCTTTGCGACGTGGTGCGGCCCCTGCCTGCTGCTGGCGCGTGAGCT
GGAGCAGGTGGCGGAGGAGATGGACGGGCGTGTCAAGGTGGTGAAGATCGACGTGGACGA
GAACCCCGACCTGTCCAACATGCTGCGGATCCAGGGCCTGCCCACCATCGTCATCATCCC
CAAGGACGCCGGCAAGCCCGCGCTGCGCACCGAGGGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002070A_C01 KCC002070A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF75752.1|AF261142_1 putative thioredoxin [Lycopersicon escu...    91  9e-18
gb|AAM61520.1| thioredoxin, putative [Arabidopsis thaliana]            91  1e-17
ref|NP_187329.1| thioredoxin family [Arabidopsis thaliana] gi|75...    91  1e-17
dbj|BAC22569.1| similar to thioredoxin [Oryza sativa (japonica c...    87  1e-16
emb|CAE05750.1| OSJNBa0064G10.1 [Oryza sativa (japonica cultivar...    79  3e-14

>gb|AAF75752.1|AF261142_1 putative thioredoxin [Lycopersicon esculentum]
          Length = 175

 Score = 90.9 bits (224), Expect = 9e-18
 Identities = 39/92 (42%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
 Frame = +2

Query: 245 VEKISGEQLEVAI-ASRDTTLIVDFFATWCGPCLLLARELEQVAEEMDGRVKVVKIDVDE 421
           V+K+S ++++  I   R+  LI+DF+ATWCGPC+L+A+ELE +A E +    +VK+D D+
Sbjct: 69  VKKLSAKEIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNALIVKVDTDD 128

Query: 422 NPDLSNMLRIQGLPTIVIIPKDAGKPALRTEG 517
             + +  ++++GLPT+  I  D+ K A+RTEG
Sbjct: 129 EYEFARDMQVRGLPTLYFISPDSSKDAIRTEG 160

>gb|AAM61520.1| thioredoxin, putative [Arabidopsis thaliana]
          Length = 183

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 41/92 (44%), Positives = 63/92 (67%), Gaps = 1/92 (1%)
 Frame = +2

Query: 245 VEKISGEQL-EVAIASRDTTLIVDFFATWCGPCLLLARELEQVAEEMDGRVKVVKIDVDE 421
           V+K+S ++L E+    R   LIVDF+ATWCGPC+L+A+ELE +A E +    +VK+D D+
Sbjct: 77  VKKLSAQELQELVKGDRKVPLIVDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDD 136

Query: 422 NPDLSNMLRIQGLPTIVIIPKDAGKPALRTEG 517
             + +  ++++GLPT+  I  D  K A+RTEG
Sbjct: 137 EYEFARDMQVRGLPTLFFISPDPSKDAIRTEG 168

>ref|NP_187329.1| thioredoxin family [Arabidopsis thaliana] gi|7549640|gb|AAF63825.1|
           thioredoxin, putative [Arabidopsis thaliana]
           gi|13878105|gb|AAK44130.1|AF370315_1 putative
           thioredoxin [Arabidopsis thaliana]
           gi|17104771|gb|AAL34274.1| putative thioredoxin
           [Arabidopsis thaliana]
          Length = 183

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 41/92 (44%), Positives = 63/92 (67%), Gaps = 1/92 (1%)
 Frame = +2

Query: 245 VEKISGEQL-EVAIASRDTTLIVDFFATWCGPCLLLARELEQVAEEMDGRVKVVKIDVDE 421
           V+K+S ++L E+    R   LIVDF+ATWCGPC+L+A+ELE +A E +    +VK+D D+
Sbjct: 77  VKKLSAQELQELVKGDRKVPLIVDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDD 136

Query: 422 NPDLSNMLRIQGLPTIVIIPKDAGKPALRTEG 517
             + +  ++++GLPT+  I  D  K A+RTEG
Sbjct: 137 EYEFARDMQVRGLPTLFFISPDPSKDAIRTEG 168

>dbj|BAC22569.1| similar to thioredoxin [Oryza sativa (japonica cultivar-group)]
          Length = 189

 Score = 87.4 bits (215), Expect = 1e-16
 Identities = 39/92 (42%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
 Frame = +2

Query: 245 VEKISGEQLEVAI-ASRDTTLIVDFFATWCGPCLLLARELEQVAEEMDGRVKVVKIDVDE 421
           V+K++ ++LE  +   R   LIVDF+ATWCGPC+L+A+++E +A E +     VK+D D+
Sbjct: 83  VKKVTAKELEELVRGERKVPLIVDFYATWCGPCVLMAQDIEMLAVEYENNALFVKVDTDD 142

Query: 422 NPDLSNMLRIQGLPTIVIIPKDAGKPALRTEG 517
             +L+  ++++GLPT+     D  K ALRTEG
Sbjct: 143 EYELARDMQVRGLPTLYFFSPDQSKDALRTEG 174

>emb|CAE05750.1| OSJNBa0064G10.1 [Oryza sativa (japonica cultivar-group)]
          Length = 180

 Score = 79.0 bits (193), Expect = 3e-14
 Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
 Frame = +2

Query: 128 ALGSLPKP---VVAARV--PVASPVSQRGAPGVTCRRSVISHGKVEKISGEQLEVAIASR 292
           AL  LP P   V + RV  P A+P   R       R        V  I   + E  +   
Sbjct: 29  ALLRLPPPPASVGSFRVVGPAAAPPGGRRIASARVRCGAA----VRFIGQSEFEAEVLQS 84

Query: 293 DTTLIVDFFATWCGPCLLLARELEQVAEEMDGRVKVVKIDVDENPDLSNMLRIQGLPTIV 472
           D  ++VDF A WCGPC L+A  ++  AEE +GR+K+VKID D NP L    ++ GLP+++
Sbjct: 85  DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIVKIDHDANPQLIEEYKVYGLPSLI 144

Query: 473 IIPKDAGKPALRTEG 517
           +       P  R EG
Sbjct: 145 LFKDGKEVPGSRREG 159



EST assemble image


clone accession position
1 HCL059b07_r AV642845 1 504
2 HC060f04_r AV636524 21 518




Chlamydomonas reinhardtii
Kazusa DNA Research Institute