KCC002060A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002060A_C02 KCC002060A_c02
gtgtacgacttcccgcagtggcagaagcaccgcagcagctaccgcttcgctgagcgcctg
ttccagctgtcgcagtcccaCATCCTCCAGAACGCGCTGCCCGCCATCTCCTGGGTGACC
CTGGTCGCCACGCTGGTTGCCTCGTACGGCTACTCGTACGACCAGCACATGCTGCCCGAC
GTCTTCCCCTCCATCTCCCCCAACGCCTCCTGCACCGCCTTCATCTCCAACACCAGCGTC
GCGCTGTCGCTGCTGCTGGTTTTCCGCACCAACTCGTCCTACGGACGGTGGGACGAGGCA
CGCAAGATGTGGGGTGGCCTGCTGAACCGCAGCCGTGACATCATGCGTCAGGGCGCGACC
TGCTTCCCGGATGACCAGGTGGAGGCCAAGAAGGCCCTGGCCCGCTGGACCGTGGCTTTC
TCGCGCGCCCTGCGCATCCACTTCCAGCCGGAGGTGACGATAGAGAGCGAGCTGCAGAAC
ATCCTGACCCCGGCGGAGCTGCAGATGCTTGCGAAGAGCCAGCACCGCCCCGTGCGCGCC
ATCCACGCCATTAGCCAGATCATCCAGTCGGTGCCCATGAGCTCCATCCACCAGCAGCAG
ATGAGCAACAACCTCACCTTCTTCCACGATGTGCTGGGAGGCTGCGAGCGCCTGCTGCGC
GCCCCCATCCCCGTGTCCTACACCCGCCACACCGCGCGCTTCCTGTTCGCGTGGCTGACT
CTGCTGCCGTTCGCGCTGTACCCCACCACCGGCTGGGGTGTGGTGCCTGTGTGCACGGGC
ATTGCCGCCGTGCTGTGTGGCATTGAGGAGATTGGCGTGCAGTGCGAGGAGCCCTTCGGC
ATCCTTCCCCTGGACGTGATCTGCAACCGCATCCAGGCCGACGTCATGGCCACGCTGAAG
GACGACGCGGACACCAAGACCATCCTGGCGGAGGCCGGACTCATCAGCCTCATCCCCTCG
GCCACCAGCGCCACCCCCGTCGCCAGCGCTGAGCCCGTGCTGGTGTCCGCGCGCCCCTCC
GCCGCGCCCGCTCCCAACAACGGCCTCCAAGTGCGGGTGGCCATGGGTGGGGAGCGCAAG
TAAGCGGCCGTGTGTCACTGGCAATCGCCTACATCCGACGAGAGCGTAATGAGCGAGCCG
AGTGGCACGTGCGCCAAGCCATGCGAGGAGCGTGAAGAGTGTTGTGATTGCGCCTGGCAG
GGGGGGGGGGTTGCAAGGCCTGCAGGCGCCGTGTCAAGAGGGGAGGGGAGGAGTACAGCG
CAAAGGAGCGGAGCGGCACGAGAGCGTGTGTTGTGGTGTGTGCGAGCATTGTCTCACCTG
ATGTGCTGTGTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002060A_C02 KCC002060A_c02
         (1333 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T47924 hypothetical protein T20K12.220 - Arabidopsis thalia...   186  6e-46
ref|NP_191691.2| expressed protein [Arabidopsis thaliana] gi|201...   186  6e-46
ref|NP_182111.1| expressed protein [Arabidopsis thaliana] gi|201...   178  2e-43
gb|AAN60484.1| Unknown protein [Oryza sativa (japonica cultivar-...   158  2e-37
ref|ZP_00107388.1| COG3781: Predicted membrane protein [Nostoc p...   135  2e-30

>pir||T47924 hypothetical protein T20K12.220 - Arabidopsis thaliana
           gi|6850899|emb|CAB71062.1| putative protein [Arabidopsis
           thaliana]
          Length = 406

 Score =  186 bits (473), Expect = 6e-46
 Identities = 107/305 (35%), Positives = 168/305 (55%), Gaps = 3/305 (0%)
 Frame = +1

Query: 1   VYDFPQWQKHRSSYRFAERLFQLSQSHILQNALPAISWVTLVATLVASYGYSYDQHMLPD 180
           +Y   +W +HRSS R    L     S ++ + +P + + T VA ++ASY  +     LP 
Sbjct: 80  LYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVIASYNSAVALDWLPG 139

Query: 181 VFPSISPNASCTAFISNTSVALSLLLVFRTNSSYGRWDEARKMWGGLLNRSRDIMRQGAT 360
           +FP +    S +     T+ AL+LLLVFRT +SY R++E RK W G++  + D+ RQ   
Sbjct: 140 IFPILR---SSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIAGTNDLARQ-VI 195

Query: 361 CFPD---DQVEAKKALARWTVAFSRALRIHFQPEVTIESELQNILTPAELQMLAKSQHRP 531
           C  D   D++  K  L R+  AF  AL+ H      I  +L+N++   +L ++ +++HRP
Sbjct: 196 CSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDLSLILQAKHRP 255

Query: 532 VRAIHAISQIIQSVPMSSIHQQQMSNNLTFFHDVLGGCERLLRAPIPVSYTRHTARFLFA 711
              I  ISQ IQ + +    +  + + +   H+ +G CE+L+  PIP+SYTR T+RFL  
Sbjct: 256 RCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIPIPLSYTRLTSRFLVF 315

Query: 712 WLTLLPFALYPTTGWGVVPVCTGIAAVLCGIEEIGVQCEEPFGILPLDVICNRIQADVMA 891
           W   LP  L+    W VVP     AA L  IEE+GV  EEPF +L LD +C+ + +++  
Sbjct: 316 WHLTLPIILWDECHWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDELCDLVHSNIQE 375

Query: 892 TLKDD 906
            +K +
Sbjct: 376 AVKSE 380

>ref|NP_191691.2| expressed protein [Arabidopsis thaliana]
           gi|20141056|sp|Q9M2D2|YU88_ARATH Hypothetical protein
           AT3g61320, chloroplast precursor
           gi|16604549|gb|AAL24280.1| AT3g61320/T20K12_220
           [Arabidopsis thaliana] gi|23296291|gb|AAN12915.1|
           At3g61320/T20K12_220 [Arabidopsis thaliana]
          Length = 410

 Score =  186 bits (473), Expect = 6e-46
 Identities = 107/305 (35%), Positives = 168/305 (55%), Gaps = 3/305 (0%)
 Frame = +1

Query: 1   VYDFPQWQKHRSSYRFAERLFQLSQSHILQNALPAISWVTLVATLVASYGYSYDQHMLPD 180
           +Y   +W +HRSS R    L     S ++ + +P + + T VA ++ASY  +     LP 
Sbjct: 84  LYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVIASYNSAVALDWLPG 143

Query: 181 VFPSISPNASCTAFISNTSVALSLLLVFRTNSSYGRWDEARKMWGGLLNRSRDIMRQGAT 360
           +FP +    S +     T+ AL+LLLVFRT +SY R++E RK W G++  + D+ RQ   
Sbjct: 144 IFPILR---SSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIAGTNDLARQ-VI 199

Query: 361 CFPD---DQVEAKKALARWTVAFSRALRIHFQPEVTIESELQNILTPAELQMLAKSQHRP 531
           C  D   D++  K  L R+  AF  AL+ H      I  +L+N++   +L ++ +++HRP
Sbjct: 200 CSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDLSLILQAKHRP 259

Query: 532 VRAIHAISQIIQSVPMSSIHQQQMSNNLTFFHDVLGGCERLLRAPIPVSYTRHTARFLFA 711
              I  ISQ IQ + +    +  + + +   H+ +G CE+L+  PIP+SYTR T+RFL  
Sbjct: 260 RCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIPIPLSYTRLTSRFLVF 319

Query: 712 WLTLLPFALYPTTGWGVVPVCTGIAAVLCGIEEIGVQCEEPFGILPLDVICNRIQADVMA 891
           W   LP  L+    W VVP     AA L  IEE+GV  EEPF +L LD +C+ + +++  
Sbjct: 320 WHLTLPIILWDECHWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDELCDLVHSNIQE 379

Query: 892 TLKDD 906
            +K +
Sbjct: 380 AVKSE 384

>ref|NP_182111.1| expressed protein [Arabidopsis thaliana]
           gi|20140947|sp|O80832|YU87_ARATH Hypothetical protein
           At2g45870, chloroplast precursor gi|7486458|pir||T02460
           hypothetical protein At2g45870 [imported] - Arabidopsis
           thaliana gi|3386607|gb|AAC28537.1| hypothetical protein
           [Arabidopsis thaliana] gi|18491251|gb|AAL69450.1|
           At2g45870/F4I18.15 [Arabidopsis thaliana]
          Length = 410

 Score =  178 bits (452), Expect = 2e-43
 Identities = 108/311 (34%), Positives = 169/311 (53%), Gaps = 2/311 (0%)
 Frame = +1

Query: 1   VYDFPQWQKHRSSYRFAERLFQLSQSHILQNALPAISWVTLVATLVASYGYSYDQHMLPD 180
           +Y    W +HRSS R    +     S ++ + +P + + T VA L+A Y  + D   LPD
Sbjct: 84  LYTHENWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPD 143

Query: 181 VFPSISPNASCTAFISNTSVALSLLLVFRTNSSYGRWDEARKMWGGLLNRSRDIMRQGAT 360
            FP +   AS   +   T+ AL+LLLVFRT +SY R+++ RK W  +++ + D+ R   +
Sbjct: 144 FFPVL--RASPLPY-QLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVIS 200

Query: 361 CF--PDDQVEAKKALARWTVAFSRALRIHFQPEVTIESELQNILTPAELQMLAKSQHRPV 534
                 D++  + AL R+ VAF  AL+ H      I S+L+N++   +L ++ +S+HRP 
Sbjct: 201 SVHGSGDELIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPR 260

Query: 535 RAIHAISQIIQSVPMSSIHQQQMSNNLTFFHDVLGGCERLLRAPIPVSYTRHTARFLFAW 714
             I  ISQ +Q + + S     +   +    + +G CE+L+  PIP+SYTR T+RFL  W
Sbjct: 261 CVIQFISQSLQLLNLDSTKIDMLETKMMQLQEGIGVCEQLMGIPIPLSYTRLTSRFLVLW 320

Query: 715 LTLLPFALYPTTGWGVVPVCTGIAAVLCGIEEIGVQCEEPFGILPLDVICNRIQADVMAT 894
              LP  L+    W VVP     AA L  IEE+GV  EEPF +L LD +C    A V++ 
Sbjct: 321 HLTLPVILWDDCHWNVVPATFISAASLFCIEEVGVLIEEPFSMLALDELC----AMVLSN 376

Query: 895 LKDDADTKTIL 927
             +  ++K ++
Sbjct: 377 SDEAVESKEVI 387

>gb|AAN60484.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 393

 Score =  158 bits (400), Expect = 2e-37
 Identities = 102/300 (34%), Positives = 154/300 (51%), Gaps = 3/300 (1%)
 Frame = +1

Query: 1   VYDFPQWQKHRSSYRFAERLFQLSQSHILQNALPAISWVTLVATLVASYGYSYDQHMLPD 180
           +Y    W++HRSS R    L     S ++ +  P +S  T  A  +A+Y           
Sbjct: 68  LYTHADWREHRSSRRHLRHLLSSLTSRVILSLAPPVSAFTAFAAAIATYN---------T 118

Query: 181 VFPSISPNASCTAFISNTSVALSLLLVFRTNSSYGRWDEARKMWGGLLNRSRDIMRQGAT 360
           + P+ +  AS   +   T+ AL+LLLVFRT +SY R+DE RK W  ++  + D+      
Sbjct: 119 LLPAYALTASSLPY-QLTAPALALLLVFRTEASYARFDEGRKAWMRVIAAAADL---AGM 174

Query: 361 CFPDDQVEAKKALARWTVAFSRALRIHFQPEVTIESELQNILTPAELQMLAKSQHRPVRA 540
                   A +AL  + +AF  AL+ H      I+ +LQ +L+  +L ++ +S+HRP   
Sbjct: 175 AMRHHNPPATRALLNYILAFPLALKCHIICHSDIKRDLQGLLSEDDLNVVLRSKHRPRCI 234

Query: 541 IHAISQIIQSVPMSSIHQQQMSNNLTFFHDVLGGCERLLRAPIPVSYTRHTARFLFAWLT 720
           I  ISQ +  +      +  M + L+ F + +  CE+L+  PIP+SYTR T+RFL  W  
Sbjct: 235 IEFISQSLYMLDFDENKRNIMESKLSCFLEGISVCEQLIGIPIPLSYTRLTSRFLVLWHL 294

Query: 721 LLPFALYPTTGWGVVPVCTGIAAVLCGIEEIGVQCEEPFGILPLDVICNRIQ---ADVMA 891
            LP  L+    W VVP     AA L  IEE+GV  EEPF +L LD +C ++     DVM+
Sbjct: 295 TLPVILWDECKWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDELCKQLHDSTQDVMS 354

>ref|ZP_00107388.1| COG3781: Predicted membrane protein [Nostoc punctiforme]
          Length = 298

 Score =  135 bits (340), Expect = 2e-30
 Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 14/231 (6%)
 Frame = +1

Query: 235 SVALSLLLVFRTNSSYGRWDEARKMWGGLLNRSRDIMRQGATCF----PDDQVEAKKALA 402
           S+ L LLLVFRTN+SY R+ E R++WG L+N +R++  Q         P+DQ + + A+ 
Sbjct: 58  SIVLGLLLVFRTNTSYERFWEGRRLWGNLVNDARNMAWQIGAILNEVEPEDQAK-RIAVM 116

Query: 403 RWTVAFSRALRIHFQPEVTIESELQNILTPAELQMLAKSQHRPVRAIHAISQIIQ----- 567
           R   A   A ++H + E  + SEL+ +++ ++   L K +  P++ +  I+  +Q     
Sbjct: 117 RLVTALIVACKLHLRSE-PVSSELEELVSQSQYLQLKKIKKPPLQIVFWIADYLQQQYQR 175

Query: 568 -SVPMSSIHQQQMSNNLTFFHDVLGGCERLLRAPIPVSYTRHTARFLFAWLTLLPFALYP 744
            +  +   H   +   +    + LG CER+LR P+P++Y+ H  + L  +  LLPF L  
Sbjct: 176 GNAVLHYGHVIFLQTTVKSLMESLGHCERILRTPLPLAYSIHLKQLLLIYCLLLPFQLVK 235

Query: 745 TTGWGVVPVCTGIAAVLCGIEEIGVQCEEPFGI----LPLDVICNRIQADV 885
             GWG  P  + I+  L GIEEIG++ E PFG     LPLD ICN I+ D+
Sbjct: 236 DLGWGTGPFVSLISFTLLGIEEIGIEIENPFGSDTNDLPLDAICNTIKYDI 286



EST assemble image


clone accession position
1 LC022b11_r AV620439 1 548
2 LC068g06_r AV623798 387 890
3 LC036a09_r AV621433 457 999
4 LC071h10_r AV624027 606 1078
5 MXL013g04_r BP093786 652 1004
6 LC001a12_r AV618900 710 1190
7 LC083a03_r AV624803 823 1333




Chlamydomonas reinhardtii
Kazusa DNA Research Institute