Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002049A_C01 KCC002049A_c01
(476 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis th... 278 2e-74
gb|AAK38497.1|AC087181_13 putative snRNP protein [Oryza sativa] 268 2e-71
pir||S53813 RNA helicase - slime mold (Dictyostelium discoideum)... 229 2e-59
pir||G86407 hypothetical protein F3H9.16 [imported] - Arabidopsi... 215 2e-55
ref|NP_703529.1| snrnp protein, putative [Plasmodium falciparum ... 213 9e-55
>ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
gi|25408302|pir||H84748 hypothetical protein At2g33730
[imported] - Arabidopsis thaliana
gi|1707017|gb|AAC69128.1| putative U5 small nuclear
ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana] gi|17473908|gb|AAL38370.1| putative U5 small
nuclear ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana] gi|20259792|gb|AAM13243.1| putative U5 small
nuclear ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana]
Length = 733
Score = 278 bits (712), Expect = 2e-74
Identities = 134/158 (84%), Positives = 148/158 (92%)
Frame = +1
Query: 1 LKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMRQPPMNEE 180
LKA+E+ GYKKPSPIQMAAIPLGL+QRDVIGIAETGSGKTAAFVLPMLAYI R PPM+EE
Sbjct: 325 LKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEE 384
Query: 181 NEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKGCEIVI 360
NE +GPYAVV+APTRELAQQIEEET K AHY G+RVTS+VGGQSIEEQG K+ +GCEIVI
Sbjct: 385 NETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVI 444
Query: 361 ATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEP 474
ATPGRL+DC++R YAVLNQCNYVVLDEADRMID+GFEP
Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEP 482
>gb|AAK38497.1|AC087181_13 putative snRNP protein [Oryza sativa]
Length = 736
Score = 268 bits (686), Expect = 2e-71
Identities = 129/158 (81%), Positives = 147/158 (92%)
Frame = +1
Query: 1 LKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMRQPPMNEE 180
L+A+EK GYK+PSPIQMA+IPLGL+QRDVIGIAETGSGKTAAFVLPML+YI R PP++EE
Sbjct: 327 LRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEE 386
Query: 181 NEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKGCEIVI 360
NEA+GPYAVV+APTRELAQQIEEET K A Y G +V S+VGGQSIEEQG K+R+GCE+VI
Sbjct: 387 NEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVI 446
Query: 361 ATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEP 474
ATPGRLLDC++R YAVLNQCNYVVLDEADRMID+GFEP
Sbjct: 447 ATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEP 484
>pir||S53813 RNA helicase - slime mold (Dictyostelium discoideum) (fragment)
gi|550331|emb|CAA57418.1| putative RNA helicase
[Dictyostelium discoideum]
Length = 566
Score = 229 bits (583), Expect = 2e-59
Identities = 106/158 (67%), Positives = 133/158 (84%)
Frame = +1
Query: 1 LKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMRQPPMNEE 180
L+AI ++GY+KPSPIQM +IP+ L RD++GIAETGSGKT AFV+PML YI +QP + ++
Sbjct: 157 LEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKD 216
Query: 181 NEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKGCEIVI 360
EADGPYA+V+APTREL QQIE+ET A + G+RV S+VGGQSIE+Q ++ KGCEI+I
Sbjct: 217 TEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIII 276
Query: 361 ATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEP 474
ATPGRL DC+++ Y VLNQCNY+VLDEAD MIDLGFEP
Sbjct: 277 ATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEP 314
>pir||G86407 hypothetical protein F3H9.16 [imported] - Arabidopsis thaliana
gi|9795619|gb|AAF98437.1|AC021044_16 Similar to RNA
helicases [Arabidopsis thaliana]
Length = 610
Score = 215 bits (548), Expect = 2e-55
Identities = 105/153 (68%), Positives = 124/153 (80%), Gaps = 2/153 (1%)
Frame = +1
Query: 22 GYKKPSPIQM--AAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMRQPPMNEENEADG 195
G K P P++ IPLGL+QRDVIGI+ TGSGKTAAFVLPMLAYI R PPM EEN+ +G
Sbjct: 215 GSKIPHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEG 274
Query: 196 PYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKGCEIVIATPGR 375
PYA+V+ PTRELA QIEEET K + Y G++ S+ G +SIE+Q KL +GCEIVIATPGR
Sbjct: 275 PYALVMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGR 334
Query: 376 LLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEP 474
LLDC++R Y VLNQCNY+VLDEADRMID+ FEP
Sbjct: 335 LLDCLERRYVVLNQCNYLVLDEADRMIDMDFEP 367
>ref|NP_703529.1| snrnp protein, putative [Plasmodium falciparum 3D7]
gi|23504671|emb|CAD51549.1| snrnp protein, putative
[Plasmodium falciparum 3D7]
Length = 1123
Score = 213 bits (542), Expect = 9e-55
Identities = 102/157 (64%), Positives = 127/157 (79%)
Frame = +1
Query: 1 LKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMRQPPMNEE 180
LKAI+K Y+KP+PIQM AIP+ L+ RD+IGIAETGSGKTAAFVLPML+Y+ + PP+ E
Sbjct: 710 LKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYE 769
Query: 181 NEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKGCEIVI 360
DGPYA+V+AP+RELA QI EET+K A Y R +VVGG++ E Q +LR+G EIVI
Sbjct: 770 TSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVI 829
Query: 361 ATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFE 471
TPGRL DC+++ Y VLNQCNYV+LDEADRM+D+GFE
Sbjct: 830 GTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFE 866
