KCC002039A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002039A_C01 KCC002039A_c01
CTCAATTTCATACATACGCTGCAAATCTTCACCCTACACACAAAGATCTACTCCACTCGC
ATCCCCCACAAACTCGACCATAATGCAGCGCATCGCCCTTACCTCGCGCGCTAGCGCCAC
CGTGGCTCGCACTGTGCGCCCTGCGCGCCAGTGCTCATCTTCTCGCCACATCTCGGGCGC
CCGCTTCGCCCCGGGTGGCTCCCCGCAATGTGACTGCCAACTTCTTCAAGTTCGGCAAGA
ACGGCTTTGATTCCGAGGCCGCTGGCATTGTCGGCAGCCAGGGTCGCGATGAGTACACCT
ACGACGATGTGGAGCAGTACTTCAACTATATGGGCTTCCTGGCCACGGAGGGCACCTATG
ACCGCATGGAGGCGATGCTCAACTCTGGGCTGCACCCGATCGACGTGATCCTGCTGCTGG
CGTGCAGTGAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002039A_C01 KCC002039A_c01
         (432 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_564580.1| expressed protein [Arabidopsis thaliana] gi|182...   107  5e-23
pir||A96546 unknown protein [imported] - Arabidopsis thaliana gi...   107  5e-23
dbj|BAC79654.1| unknown protein [Oryza sativa (japonica cultivar...    54  4e-07
gb|AAP44675.1| hypothetical protein [Oryza sativa (japonica cult...    49  2e-05
emb|CAD39029.1| hypothetical protein [Homo sapiens]                    38  0.037

>ref|NP_564580.1| expressed protein [Arabidopsis thaliana] gi|18252245|gb|AAL61955.1|
           unknown protein [Arabidopsis thaliana]
           gi|21386977|gb|AAM47892.1| unknown protein [Arabidopsis
           thaliana] gi|21553984|gb|AAM63065.1| unknown
           [Arabidopsis thaliana]
          Length = 175

 Score =  107 bits (266), Expect = 5e-23
 Identities = 50/82 (60%), Positives = 63/82 (75%), Gaps = 2/82 (2%)
 Frame = +3

Query: 192 RVAPRNV--TANFFKFGKNGFDSEAAGIVGSQGRDEYTYDDVEQYFNYMGFLATEGTYDR 365
           R+ P N   T  +FKFGKNG D+E AGI GSQ RD++  DDVEQYFNYMG LA EGTY +
Sbjct: 47  RLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSK 106

Query: 366 MEAMLNSGLHPIDVILLLACSE 431
           MEA+LN  +HP+D++L+LA +E
Sbjct: 107 MEALLNLNIHPVDILLMLAATE 128

>pir||A96546 unknown protein [imported] - Arabidopsis thaliana
           gi|12321788|gb|AAG50930.1|AC079284_5 unknown protein
           [Arabidopsis thaliana]
          Length = 257

 Score =  107 bits (266), Expect = 5e-23
 Identities = 50/82 (60%), Positives = 63/82 (75%), Gaps = 2/82 (2%)
 Frame = +3

Query: 192 RVAPRNV--TANFFKFGKNGFDSEAAGIVGSQGRDEYTYDDVEQYFNYMGFLATEGTYDR 365
           R+ P N   T  +FKFGKNG D+E AGI GSQ RD++  DDVEQYFNYMG LA EGTY +
Sbjct: 129 RLGPSNGSRTTCWFKFGKNGVDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSK 188

Query: 366 MEAMLNSGLHPIDVILLLACSE 431
           MEA+LN  +HP+D++L+LA +E
Sbjct: 189 MEALLNLNIHPVDILLMLAATE 210

>dbj|BAC79654.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 81

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 22/34 (64%), Positives = 29/34 (84%)
 Frame = +3

Query: 330 MGFLATEGTYDRMEAMLNSGLHPIDVILLLACSE 431
           MG LA EGTYD+MEA+LN  +HP+D++L+LA SE
Sbjct: 1   MGMLAVEGTYDKMEALLNQDIHPVDILLMLAASE 34

>gb|AAP44675.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 271

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 23/27 (84%)
 Frame = +3

Query: 318 YFNYMGFLATEGTYDRMEAMLNSGLHP 398
           YFNYMG LA EGTYD++EA+LN  +HP
Sbjct: 144 YFNYMGMLAAEGTYDKIEALLNQDIHP 170

>emb|CAD39029.1| hypothetical protein [Homo sapiens]
          Length = 364

 Score = 37.7 bits (86), Expect = 0.037
 Identities = 25/71 (35%), Positives = 33/71 (46%)
 Frame = +3

Query: 60  HPPQTRP*CSASPLPRALAPPWLALCALRASAHLLATSRAPASPRVAPRNVTANFFKFGK 239
           H PQ  P   A+P P+ +A P  A     A     +  + P +  VAPRN  A F + G 
Sbjct: 89  HVPQQAPSPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQSGG 148

Query: 240 NGFDSEAAGIV 272
            G DS + G V
Sbjct: 149 AGSDSNSPGNV 159



EST assemble image


clone accession position
1 MX223g12_r BP090431 1 403
2 MX219g01_r BP090153 121 434
3 MX060h03_r BP088454 131 458
4 HC053g06_r AV635992 134 552
5 MX227g09_r BP090708 134 454




Chlamydomonas reinhardtii
Kazusa DNA Research Institute