Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002030A_C01 KCC002030A_c01
(531 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195848.1| expressed protein [Arabidopsis thaliana] gi|112... 165 4e-40
dbj|BAC65404.1| synbindin-like protein [Oryza sativa (japonica c... 162 2e-39
pir||T50999 hypothetical protein B7F18.180 [imported] - Neurospo... 117 7e-26
ref|XP_345932.1| similar to synbindin [Rattus norvegicus] 114 1e-24
ref|NP_068561.1| trafficking protein particle complex 4; syndeca... 112 2e-24
>ref|NP_195848.1| expressed protein [Arabidopsis thaliana] gi|11282327|pir||T48249
hypothetical protein T1E22.40 - Arabidopsis thaliana
gi|7406424|emb|CAB85533.1| putative protein [Arabidopsis
thaliana] gi|21618125|gb|AAM67175.1| unknown
[Arabidopsis thaliana] gi|28393092|gb|AAO41980.1|
unknown protein [Arabidopsis thaliana]
gi|28827482|gb|AAO50585.1| unknown protein [Arabidopsis
thaliana]
Length = 141
Score = 165 bits (417), Expect = 4e-40
Identities = 75/111 (67%), Positives = 95/111 (85%)
Frame = +3
Query: 198 SVYSLYVINKSGGLIYNRDFTEAARVDTNDSLRLASIWHSLHAIAQQLSPVPGCTGIELL 377
++YSLY+INKSGGLI+ +D R+DTNDSLR+AS+WHS+HAI+QQLSPV GC+GIELL
Sbjct: 3 AIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIELL 62
Query: 378 EADTFNLHCFQTLTGTKFLLVVDPHASFIPALLQRIYELYSDYVMKNPFYE 530
EADTF+LHCFQ+L GTKF +V +P + +LL+ IYELY+DYV+KNPFYE
Sbjct: 63 EADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYE 113
>dbj|BAC65404.1| synbindin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 143
Score = 162 bits (411), Expect = 2e-39
Identities = 74/111 (66%), Positives = 92/111 (82%)
Frame = +3
Query: 198 SVYSLYVINKSGGLIYNRDFTEAARVDTNDSLRLASIWHSLHAIAQQLSPVPGCTGIELL 377
++YSL++INKSGGLIY +D+ A R DTNDSLRLAS+WHS+HAI+QQLSP PGC GI+LL
Sbjct: 5 AIYSLFIINKSGGLIYYKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGIDLL 64
Query: 378 EADTFNLHCFQTLTGTKFLLVVDPHASFIPALLQRIYELYSDYVMKNPFYE 530
+A F+LHCFQ+LTGTKF V + A I LL+ IYELY+D+V+KNPFYE
Sbjct: 65 QAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIYELYTDFVLKNPFYE 115
>pir||T50999 hypothetical protein B7F18.180 [imported] - Neurospora crassa
gi|9367303|emb|CAB97319.1| conserved hypothetical
protein [Neurospora crassa]
Length = 161
Score = 117 bits (294), Expect = 7e-26
Identities = 63/137 (45%), Positives = 85/137 (61%), Gaps = 25/137 (18%)
Frame = +3
Query: 195 MSVYSLYVINKSGGLIYNRDFTEAA--RVDTNDSLRLASIWHSLHAIAQQLSPV------ 350
M+V+SL +INK+GGLIYNR F E ++ TND L LA +H +HAI +L+PV
Sbjct: 1 MTVFSLVIINKAGGLIYNRTFHEGGLNKISTNDYLVLAGTFHGVHAITARLNPVKSAPER 60
Query: 351 ------PGC-----------TGIELLEADTFNLHCFQTLTGTKFLLVVDPHASFIPALLQ 479
PG +G+E+LE++ F L CF TLTG KFLL D + + +++
Sbjct: 61 PLSNSIPGVPGGILTRPEPPSGLEVLESENFRLQCFNTLTGVKFLLFTDTTQTNVDVIIR 120
Query: 480 RIYELYSDYVMKNPFYE 530
RIY+LYSDYVMKNPFY+
Sbjct: 121 RIYDLYSDYVMKNPFYQ 137
>ref|XP_345932.1| similar to synbindin [Rattus norvegicus]
Length = 193
Score = 114 bits (284), Expect = 1e-24
Identities = 64/161 (39%), Positives = 87/161 (53%), Gaps = 50/161 (31%)
Frame = +3
Query: 195 MSVYSLYVINKSGGLI--------------------------------YNRDFTEAA--- 269
M+++S+YV+NK+GGLI Y D E
Sbjct: 1 MAIFSVYVVNKAGGLIYQWDSYSPRAEAEKTFSYPLDLLLKLHDERVLYTADGKEVLEYL 60
Query: 270 ---------------RVDTNDSLRLASIWHSLHAIAQQLSPVPGCTGIELLEADTFNLHC 404
R+ +N+ L LAS++HSL AI QLSP G +GIE+LE DTF LHC
Sbjct: 61 GNSANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHC 120
Query: 405 FQTLTGTKFLLVVDPHASFIPALLQRIYELYSDYVMKNPFY 527
FQTLTG KF+++ DP + I +LL++IYE+YSD+ +KNPFY
Sbjct: 121 FQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFY 161
>ref|NP_068561.1| trafficking protein particle complex 4; syndecan binding protein 2;
synbindin [Mus musculus]
gi|20178117|sp|Q9ES56|TPC4_MOUSE Trafficking protein
particle complex subunit 4 (Synbindin) (TRS23 homolog)
gi|10952522|gb|AAG24950.1|AF233340_1 synbindin [Mus
musculus] gi|24416518|gb|AAH38898.1| Trafficking protein
particle complex 4 [Mus musculus]
gi|26327993|dbj|BAC27737.1| unnamed protein product [Mus
musculus]
Length = 219
Score = 112 bits (281), Expect = 2e-24
Identities = 51/86 (59%), Positives = 68/86 (78%)
Frame = +3
Query: 270 RVDTNDSLRLASIWHSLHAIAQQLSPVPGCTGIELLEADTFNLHCFQTLTGTKFLLVVDP 449
R+ +N+ L LAS++HSL AI QLSP G +GIE+LE DTF LHCFQTLTG KF+++ DP
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161
Query: 450 HASFIPALLQRIYELYSDYVMKNPFY 527
+ I +LL++IYE+YSD+ +KNPFY
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFY 187
Score = 32.7 bits (73), Expect = 3.0
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 195 MSVYSLYVINKSGGLIYNRD 254
M+++S+YV+NK+GGLIY D
Sbjct: 1 MAIFSVYVVNKAGGLIYQWD 20
