KCC002029A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002029A_C01 KCC002029A_c01
aactaagcgcctagctcaataaaatgtaGAAAGCTTCCAAAAACAGTCGTAAAATGGTTG
TTCACTATTTCCTCAAGACAGCTGTGCCTTTAAACGAGCCTACGGGCGTGACGGCGCGTT
TAGATGCTAGCGGAGAGGTCCAGACGCTGCTCACGACAACAGCAGGCGAATTCTACCCGA
TTCTTGGGGCAGACAACCGCGCTGGACTGGAGCTGGGCCCGTCGCTGCAGCTGTTTGAAG
CCAGCGATTCAATAGAACAGCCCCGGAGACCGTTTGGTGGCCTGTCGAAGTGGGTCGGGT
CGCCTACCTGGGATGCGTTCTCGCACTCGGTCTTGTTCATCCACGGCGGTGCCATTCTCC
GGCTGGTGGGCGATGAAGTCAGTTTGGTGGCGGGAGACGTGGAGGAGCGCGGCGAGCAAG
ACGGTGTGGGACCGGACGCACTGTTCAGTGGACCCGAGTTCCTGGTGTCAGATGGCGTAT
GCTCGCTCTACTGTGCAGATGAACGCTCCATTCGCCGCATCATCCTTCCCGCCTGTTGGG
CGGCAGCGGCGCCGCCGTACCCGGCGCCGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002029A_C01 KCC002029A_c01
         (571 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAQ82687.1| Epa5p [Candida glabrata]                                45  7e-04
ref|NP_508292.1| putative protein family member (XC177) [Caenorh...    44  0.002
ref|NP_508293.1| putative protein family member (XC177) [Caenorh...    44  0.002
gb|AAP82647.1| Hypothetical protein K06A9.1c [Caenorhabditis ele...    44  0.002
pir||S53363 mucin 5AC (clone JER58) - human (fragment) gi|563377...    43  0.003

>gb|AAQ82687.1| Epa5p [Candida glabrata]
          Length = 1218

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 35/127 (27%), Positives = 61/127 (47%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTEC 323
           SS+  S  +PS + +S   +S+S  + S SP SS+S ++  +SS +S   +    + +  
Sbjct: 368 SSSSSSSPSPSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 427

Query: 322 ENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSV 143
            ++S    P+      +     S  S +S+S S   SSSP+  S+     +S +   SS 
Sbjct: 428 SSSSSSPSPSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSS 487

Query: 142 WTSPLAS 122
            +SP  S
Sbjct: 488 SSSPSPS 494

 Score = 41.2 bits (95), Expect = 0.010
 Identities = 36/131 (27%), Positives = 57/131 (43%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTEC 323
           SS+  S  + S + +S P  S S  + S S  SS+S ++  +SS +S     P  + +  
Sbjct: 417 SSSSSSSSSSSSSSSSSPSPSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSS 476

Query: 322 ENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSV 143
            ++S     +    P       S  S +S+S S  PSS P   S      N  +V  SSV
Sbjct: 477 SSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSPSIQPSSKPVDPSPADPSNNPSSVNPSSV 536

Query: 142 WTSPLASKRAV 110
             S + S  ++
Sbjct: 537 NPSSINSSPSI 547

 Score = 37.4 bits (85), Expect = 0.15
 Identities = 34/127 (26%), Positives = 58/127 (44%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTEC 323
           SS+  S  +PS + +S    S+S  + S S  SS SP++  +SS +S   +    + +  
Sbjct: 366 SSSSSSSSSPSPSSSS----SSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSS 421

Query: 322 ENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSV 143
            ++S     +    P       S  S +S+S S   SSS +  S+P    +S +   SS 
Sbjct: 422 SSSSSSSSSSSSPSPSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSS 481

Query: 142 WTSPLAS 122
            +S  +S
Sbjct: 482 SSSSSSS 488

 Score = 35.8 bits (81), Expect = 0.42
 Identities = 32/122 (26%), Positives = 57/122 (46%)
 Frame = -1

Query: 487 SEHTPSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTECENASQ 308
           S  +PS + +S   +S+S  + S S  SS+S ++  +SS +S   +    + +   ++S 
Sbjct: 333 SSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSS 392

Query: 307 VGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSVWTSPL 128
              P+    P +     S  S +S+S S   SSS +  S+      SP+   SS  +S  
Sbjct: 393 SSSPS----PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSSSSS 448

Query: 127 AS 122
           +S
Sbjct: 449 SS 450

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 33/136 (24%), Positives = 61/136 (44%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTEC 323
           SS+  S  + S + +S   +S+S  + S S  S +S ++  +SS +S   + P  + +  
Sbjct: 344 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSPSPSSSSS 403

Query: 322 ENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSV 143
            ++S            +     S  S +S+S S   S SP+R S+     +S +   SS 
Sbjct: 404 SSSSS-------SSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSSSSSSSSSSSSS 456

Query: 142 WTSPLASKRAVTPVGS 95
            +S  +S  + +P  S
Sbjct: 457 SSSSSSSSSSPSPSSS 472

 Score = 33.9 bits (76), Expect = 1.6
 Identities = 33/125 (26%), Positives = 54/125 (42%), Gaps = 6/125 (4%)
 Frame = -1

Query: 478 TPSDTRNSG------PLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTECEN 317
           TPS   NS       P +S+S  + S S  SS+S ++  +SS +S   +      +   +
Sbjct: 324 TPSQDINSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSS 383

Query: 316 ASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSVWT 137
           +S     +    P       S  S +S+S S   SSS +  S+     +SP+   SS  +
Sbjct: 384 SSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSS 443

Query: 136 SPLAS 122
           S  +S
Sbjct: 444 SSSSS 448

 Score = 32.7 bits (73), Expect = 3.6
 Identities = 30/124 (24%), Positives = 56/124 (44%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTEC 323
           SS+  S  + S + +S   +S+S  + S S  SS+S ++  +SS +S   +P   + +  
Sbjct: 385 SSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSS 444

Query: 322 ENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSV 143
            ++S     +      +        S +S+S S   SSS +  S+     +S +   SS 
Sbjct: 445 SSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSS 504

Query: 142 WTSP 131
            +SP
Sbjct: 505 SSSP 508

 Score = 32.3 bits (72), Expect = 4.7
 Identities = 29/115 (25%), Positives = 52/115 (45%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTEC 323
           SS+  S  + S + +S   +S+S P+PS S  SS+S ++  +SS +S        + +  
Sbjct: 410 SSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSSSSSSSSSSSSSS-------SSSSS 462

Query: 322 ENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAV 158
            ++S     +      +     S  S + +  S   SSS +  S+P I  +S  V
Sbjct: 463 SSSSPSPSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSPSIQPSSKPV 517

>ref|NP_508292.1| putative protein family member (XC177) [Caenorhabditis elegans]
           gi|7505357|pir||T34434 hypothetical protein K06A9.1a -
           Caenorhabditis elegans gi|3834294|gb|AAC70890.1|
           Hypothetical protein K06A9.1b [Caenorhabditis elegans]
          Length = 2232

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCS---PRSSTSPATKLTSSPTSRRMAPPWMNK 332
           SS+  S    +   + G +++ SGPT S     P SSTSPA   + +P+S   +P     
Sbjct: 490 SSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSS---SPASTGS 546

Query: 331 T-ECENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPA-- 161
           T     +S +   T      +G  G S  +LAS++ + G SS+    S+P+    SPA  
Sbjct: 547 TITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPN 606

Query: 160 ------VVVSSVWTSPLASKRAVTPVGSFKGT 83
                    SS   SP  +  + TP GS + T
Sbjct: 607 TGSTTPSQTSSQSPSPSMNPSSSTPTGSSQST 638

>ref|NP_508293.1| putative protein family member (XC177) [Caenorhabditis elegans]
           gi|7505356|pir||T34433 hypothetical protein K06A9.1a -
           Caenorhabditis elegans gi|3834293|gb|AAC70889.1|
           Hypothetical protein K06A9.1a [Caenorhabditis elegans]
          Length = 1032

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCS---PRSSTSPATKLTSSPTSRRMAPPWMNK 332
           SS+  S    +   + G +++ SGPT S     P SSTSPA   + +P+S   +P     
Sbjct: 490 SSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSS---SPASTGS 546

Query: 331 T-ECENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPA-- 161
           T     +S +   T      +G  G S  +LAS++ + G SS+    S+P+    SPA  
Sbjct: 547 TITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPN 606

Query: 160 ------VVVSSVWTSPLASKRAVTPVGSFKGT 83
                    SS   SP  +  + TP GS + T
Sbjct: 607 TGSTTPSQTSSQSPSPSMNPSSSTPTGSSQST 638

>gb|AAP82647.1| Hypothetical protein K06A9.1c [Caenorhabditis elegans]
          Length = 825

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
 Frame = -1

Query: 502 SSAQ*SEHTPSDTRNSGPLNSASGPTPSCS---PRSSTSPATKLTSSPTSRRMAPPWMNK 332
           SS+  S    +   + G +++ SGPT S     P SSTSPA   + +P+S   +P     
Sbjct: 283 SSSVGSSTQSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSS---SPASTGS 339

Query: 331 T-ECENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPA-- 161
           T     +S +   T      +G  G S  +LAS++ + G SS+    S+P+    SPA  
Sbjct: 340 TITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPN 399

Query: 160 ------VVVSSVWTSPLASKRAVTPVGSFKGT 83
                    SS   SP  +  + TP GS + T
Sbjct: 400 TGSTTPSQTSSQSPSPSMNPSSSTPTGSSQST 431

>pir||S53363 mucin 5AC (clone JER58) - human (fragment)
           gi|563377|emb|CAA84032.1| mucin [Homo sapiens]
          Length = 279

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
 Frame = -1

Query: 475 PSDTRNSGPLNSA-SGPTPSCSPRSSTS------------PATKLTSSPTSRRMAPPWMN 335
           P+ +  S P  S  S PT S +  S+TS            P T  TS+PT+R  + P  +
Sbjct: 60  PTTSTTSSPTTSTTSAPTTSTTSASTTSTTSGAGTTPSPVPTTSTTSAPTTRTTSAPISS 119

Query: 334 KTECENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVV 155
            T     S    P      P+ +   S  S  + S + GP ++P+ +    I     +V 
Sbjct: 120 TTSATTTSTTSGP---GTTPSPVPTTSTTSAPTTSTTSGPGTTPSAVPTTSI----TSVP 172

Query: 154 VSSVWTSPLASKRAVTPVGSFKG 86
            +S  ++P++S  + T      G
Sbjct: 173 TTSTNSAPISSTTSATTTSRISG 195

 Score = 37.7 bits (86), Expect = 0.11
 Identities = 32/127 (25%), Positives = 52/127 (40%)
 Frame = -1

Query: 475 PSDTRNSGPLNSASGPTPSCSPRSSTSPATKLTSSPTSRRMAPPWMNKTECENASQVGDP 296
           P+ +  SGP     G TPS  P +ST      TS+PT+R  + P  + T     S    P
Sbjct: 4   PTTSTTSGP-----GTTPSPVPTTST------TSAPTTRTTSAPKSSTTSAATTSTTSGP 52

Query: 295 THFDRPPNGLRGCSIESLASNSCSDGPSSSPARLSAPRIG*NSPAVVVSSVWTSPLASKR 116
               RP       S  + ++ S     ++S +  S       +P+ V ++  TS   ++ 
Sbjct: 53  ETTPRPVPTTSTTSSPTTSTTSAPTTSTTSASTTSTTSGAGTTPSPVPTTSTTSAPTTRT 112

Query: 115 AVTPVGS 95
              P+ S
Sbjct: 113 TSAPISS 119

 Score = 33.1 bits (74), Expect = 2.7
 Identities = 28/111 (25%), Positives = 49/111 (43%), Gaps = 20/111 (18%)
 Frame = -1

Query: 472 SDTRNSGPLNSASGP--TPSCSPRSSTS--PATK----------------LTSSPTSRRM 353
           S T ++   ++ SGP  TPS  P +ST+  P T                 +TS PT+   
Sbjct: 118 SSTTSATTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTPSAVPTTSITSVPTTSTN 177

Query: 352 APPWMNKTECENASQVGDPTHFDRPPNGLRGCSIESLASNSCSDGPSSSPA 200
           + P  + T     S++  P   +  P+ +   S  S ++ S + GP ++P+
Sbjct: 178 SAPISSTTSATTTSRISGP---ETTPSPVPTASTTSASTTSTTSGPGTTPS 225

 Score = 32.0 bits (71), Expect = 6.1
 Identities = 37/133 (27%), Positives = 55/133 (40%), Gaps = 16/133 (12%)
 Frame = -1

Query: 472 SDTRNSGPLNSASGP--TPSCSPRSST--SPATKLTSSPTSRRMAPPWMNKTECENASQV 305
           S T ++   ++ SGP  TP   P +ST  SP T  TS+PT+   +    + T     +  
Sbjct: 38  SSTTSAATTSTTSGPETTPRPVPTTSTTSSPTTSTTSAPTTSTTSASTTSTTSGAGTTPS 97

Query: 304 GDPT--HFDRPPNGLRGCSIESLAS---NSCSDGPSSSPARL------SAPRIG*NS-PA 161
             PT      P        I S  S    S + GP ++P+ +      SAP     S P 
Sbjct: 98  PVPTTSTTSAPTTRTTSAPISSTTSATTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSGPG 157

Query: 160 VVVSSVWTSPLAS 122
              S+V T+ + S
Sbjct: 158 TTPSAVPTTSITS 170



EST assemble image


clone accession position
1 LCL091e11_r AV631293 1 162
2 HC051d03_r AV635817 29 356
3 LCL086d09_r AV630926 43 478
4 LCL090a08_r AV631190 177 571




Chlamydomonas reinhardtii
Kazusa DNA Research Institute