KCC002018A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002018A_C01 KCC002018A_c01
ctgcgattttgtccgcgTTGGAAGCCTTGGTTCATTGATCGCTGGCCTTGCCCAGAGTGT
GCAACACGTAACGAATATAAATGATCTAACGGCACAAACTTTCGTTGCATTATAGCTCAG
GGGAGTTGCAATCTGAGTCGCCAAAGGATGTTGCCCGCGATGCTAGTGCCTCGCGCGGCT
GCTGCAGCGTGGCGCCTCGGCAGAGCACAGCTGGCGTGTTGTGGGTTATGGCGTGCGCAC
TCGGCGCAGGCCAGCCCAGACACGGCCAAACCCGCACGCGAGGAGATGCGCTATGATGTC
CTGGTAGTGGGCGCGGGGCCGGCCGGCCTCTCCGCGGCCATTCGCCTGAAGACGTCATCT
CAGGCTGCTGGAAAGGACATCAGTGTGTGCGTCATTGAGAAGGGGGCCGAGGTGGGCTCG
CACATCCTGTCGGGCAACGTGCTGGAGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002018A_C01 KCC002018A_c01
         (449 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM53303.1| biotin synthase Bio B [Arabidopsis thaliana] gi|2...    87  4e-17
ref|NP_181868.1| electron transfer flavo protein ubiquinone oxid...    87  4e-17
ref|ZP_00085949.1| COG0644: Dehydrogenases (flavoproteins) [Pseu...    84  6e-16
gb|AAD21543.1| electrotransfer ubiquinone oxidoreductase [Zymomo...    82  2e-15
ref|ZP_00136297.1| COG0644: Dehydrogenases (flavoproteins) [Pseu...    82  2e-15

>gb|AAM53303.1| biotin synthase Bio B [Arabidopsis thaliana]
           gi|23198330|gb|AAN15692.1| biotin synthase Bio B
           [Arabidopsis thaliana]
          Length = 401

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 42/62 (67%), Positives = 50/62 (79%)
 Frame = +1

Query: 262 TAKPAREEMRYDVLVVGAGPAGLSAAIRLKTSSQAAGKDISVCVIEKGAEVGSHILSGNV 441
           +++  RE + YDVL+VGAGPAGLSAAIRLK  SQ    D+SVCV+EKGAEVG HI+SGNV
Sbjct: 90  SSEAVRESIEYDVLIVGAGPAGLSAAIRLKQLSQEKNIDLSVCVVEKGAEVGGHIISGNV 149

Query: 442 LE 447
            E
Sbjct: 150 FE 151

>ref|NP_181868.1| electron transfer flavo protein ubiquinone oxidoreductase -related
           [Arabidopsis thaliana] gi|25408864|pir||F84865
           hypothetical protein At2g43400 [imported] - Arabidopsis
           thaliana gi|2288999|gb|AAB64328.1| putative electron
           transfer flavoprotein ubiquinone oxidoreductase
           [Arabidopsis thaliana]
          Length = 633

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 42/62 (67%), Positives = 50/62 (79%)
 Frame = +1

Query: 262 TAKPAREEMRYDVLVVGAGPAGLSAAIRLKTSSQAAGKDISVCVIEKGAEVGSHILSGNV 441
           +++  RE + YDVL+VGAGPAGLSAAIRLK  SQ    D+SVCV+EKGAEVG HI+SGNV
Sbjct: 90  SSEAVRESIEYDVLIVGAGPAGLSAAIRLKQLSQEKNIDLSVCVVEKGAEVGGHIISGNV 149

Query: 442 LE 447
            E
Sbjct: 150 FE 151

>ref|ZP_00085949.1| COG0644: Dehydrogenases (flavoproteins) [Pseudomonas fluorescens
           PfO-1]
          Length = 554

 Score = 83.6 bits (205), Expect = 6e-16
 Identities = 40/57 (70%), Positives = 48/57 (84%)
 Frame = +1

Query: 277 REEMRYDVLVVGAGPAGLSAAIRLKTSSQAAGKDISVCVIEKGAEVGSHILSGNVLE 447
           RE M +DV++VGAGPAGLSAA RLK  +  AGK+ISVCV+EKG+EVG+HILSG V E
Sbjct: 3   REYMEFDVVIVGAGPAGLSAACRLKQKAAEAGKEISVCVVEKGSEVGAHILSGAVFE 59

>gb|AAD21543.1| electrotransfer ubiquinone oxidoreductase [Zymomonas mobilis]
          Length = 551

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 38/57 (66%), Positives = 49/57 (85%)
 Frame = +1

Query: 277 REEMRYDVLVVGAGPAGLSAAIRLKTSSQAAGKDISVCVIEKGAEVGSHILSGNVLE 447
           RE M YDV++VGAGPAGLSAAIRLK  ++   +DI+VCV+EKGAEVG+HILSG +++
Sbjct: 7   RESMEYDVVIVGAGPAGLSAAIRLKQLAEKNDQDITVCVLEKGAEVGAHILSGAIID 63

>ref|ZP_00136297.1| COG0644: Dehydrogenases (flavoproteins) [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 551

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 39/57 (68%), Positives = 48/57 (83%)
 Frame = +1

Query: 277 REEMRYDVLVVGAGPAGLSAAIRLKTSSQAAGKDISVCVIEKGAEVGSHILSGNVLE 447
           RE M +DV++VGAGPAGLSAA RLK  +  AG++ISVCV+EKG+EVG+HILSG V E
Sbjct: 3   REYMEFDVVIVGAGPAGLSAACRLKQKAAEAGQEISVCVVEKGSEVGAHILSGAVFE 59



EST assemble image


clone accession position
1 HC049e01_r AV635679 1 449
2 LCL075e10_r AV630217 18 423




Chlamydomonas reinhardtii
Kazusa DNA Research Institute