KCC002002A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002002A_C01 KCC002002A_c01
gcaatttGGGCATTGACACCTGCACACTCGCAGAGCAATCGCCGTCAGCCCTCGCGCTCT
TAGGCCCAAACAGTACAAGCTGCCGACTGCTCTCAGGCGACCCTGAACAATGGGCGAAAC
CTGCTTCCACATGCCCGCTAGGGTGTTCGGTTTTGAGTCCAGCGCCGCTGAGGCCGCGCA
GCCCACACGGCAGGCCACGACGGCATCGCCTAGCGCGCCCTCGCTCCTCAGCCGCCTGCT
AAAGGATGGTTCCTCTCAAATGCCCGTTGCTTATATGGACGCTTCGGACGCGTATTCAGA
CGATTCCGACGACGATATGGAGGAGGGCGACTGTGCGGAGGCTGGCGATGAGGAAACCGA
GGAGGATGGCTCCATCCCCATTCCGCCGACCTCGGAGTCATGGCTGAAGCAGCAGCGCGA
GGCGCACGCGCGCTTTGTGTATGCGGTACAAATTGAGGAAATGCGTCAACAGTGTGCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002002A_C01 KCC002002A_c01
         (479 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_598680.2| myeloid/lymphoid or mixed-lineage leukemia tran...    44  8e-04
ref|XP_204197.2| homolog of human MLLT2 unidentified gene [Mus m...    44  8e-04
pir||T42230 AF4 protein - mouse (fragment) gi|2582019|gb|AAB8242...    44  0.001
gb|AAN71254.1| LD33755p [Drosophila melanogaster]                      42  0.004
ref|NP_651304.1| CG3744-PA [Drosophila melanogaster] gi|7301226|...    42  0.004

>ref|NP_598680.2| myeloid/lymphoid or mixed-lineage leukemia translocated to 2
           homolog; robotic [Mus musculus]
           gi|13878317|sp|O88573|AF4_MOUSE AF-4 protein
           (Proto-oncogene AF4) gi|11360348|pir||T42625 AF-4
           protein - mouse gi|3328190|gb|AAD08668.1| proto-oncogene
           AF4 [Mus musculus]
          Length = 1217

 Score = 44.3 bits (103), Expect = 8e-04
 Identities = 32/126 (25%), Positives = 45/126 (35%)
 Frame = +2

Query: 26  TRRAIAVSPRALRPKQYKLPTALRRP*TMGETCFHMPARVFGFESSAAEAAQPTRQATTA 205
           T+  + VSP     KQY  P+        G +      ++   E S  E A     +  A
Sbjct: 375 TKDLLHVSPATQSQKQYDTPSKTHPNPQQGTSMLEDDLQLSDSEDSDTEQATEKPPSPPA 434

Query: 206 SPSAPSLLSRLLKDGSSQMPVAYMDASDAYSDDSDDDMEEGDCAEAGDEETEEDGSIPIP 385
            PSAP  L   +    S    +    SD+ SD   +        E  +E  E     P P
Sbjct: 435 PPSAPQTLPEPVASAHSSSGESESSESDSSSDSESESSSSDSEEEEENEPLETRAPEPEP 494

Query: 386 PTSESW 403
           PT+  W
Sbjct: 495 PTTNKW 500

>ref|XP_204197.2| homolog of human MLLT2 unidentified gene [Mus musculus]
          Length = 1226

 Score = 44.3 bits (103), Expect = 8e-04
 Identities = 32/126 (25%), Positives = 45/126 (35%)
 Frame = +2

Query: 26  TRRAIAVSPRALRPKQYKLPTALRRP*TMGETCFHMPARVFGFESSAAEAAQPTRQATTA 205
           T+  + VSP     KQY  P+        G +      ++   E S  E A     +  A
Sbjct: 383 TKDPLHVSPATQSQKQYDTPSKTHPNPQQGTSMLEDDLQLSDSEDSDTEQATEKPPSPPA 442

Query: 206 SPSAPSLLSRLLKDGSSQMPVAYMDASDAYSDDSDDDMEEGDCAEAGDEETEEDGSIPIP 385
            PSAP  L   +    S    +    SD+ SD   +        E  +E  E     P P
Sbjct: 443 PPSAPQTLPEPVASAHSSSGESESSESDSSSDSESESSSSDSEEEEENEPLETRAPEPEP 502

Query: 386 PTSESW 403
           PT+  W
Sbjct: 503 PTTNKW 508

>pir||T42230 AF4 protein - mouse (fragment) gi|2582019|gb|AAB82427.1| mAF4 [Mus
           musculus]
          Length = 1211

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 32/126 (25%), Positives = 44/126 (34%)
 Frame = +2

Query: 26  TRRAIAVSPRALRPKQYKLPTALRRP*TMGETCFHMPARVFGFESSAAEAAQPTRQATTA 205
           T+  + VSP     KQY  P+        G +      ++   E S  E A     +  A
Sbjct: 369 TKDPLHVSPATQSQKQYDTPSKTHPNPQQGTSMLEDDLQLSDSEDSDTEQAHEKPPSPPA 428

Query: 206 SPSAPSLLSRLLKDGSSQMPVAYMDASDAYSDDSDDDMEEGDCAEAGDEETEEDGSIPIP 385
            PSAP  L        S    +    SD+ SD   +        E  +E  E     P P
Sbjct: 429 PPSAPQTLPEPAASAHSSSGESESSESDSSSDSESESSSSDSEEEEENEPLETRAPEPEP 488

Query: 386 PTSESW 403
           PT+  W
Sbjct: 489 PTTNKW 494

>gb|AAN71254.1| LD33755p [Drosophila melanogaster]
          Length = 1053

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 26/87 (29%), Positives = 43/87 (48%)
 Frame = +2

Query: 158 SSAAEAAQPTRQATTASPSAPSLLSRLLKDGSSQMPVAYMDASDAYSDDSDDDMEEGDCA 337
           S+AA AA  T   T    +A S+++  L   +S  P   +D      D+ DD+ +  DC 
Sbjct: 93  STAAAAAAATATTTEVVVAAASVITNHLSSPTSGTPPHGLDV-----DEGDDECD--DCE 145

Query: 338 EAGDEETEEDGSIPIPPTSESWLKQQR 418
           E  D+  + DG I  P  ++SW + ++
Sbjct: 146 EDEDDPVDNDGHIAAPTPNKSWAENKQ 172

>ref|NP_651304.1| CG3744-PA [Drosophila melanogaster] gi|7301226|gb|AAF56357.1|
           CG3744-PA [Drosophila melanogaster]
          Length = 1042

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 26/87 (29%), Positives = 43/87 (48%)
 Frame = +2

Query: 158 SSAAEAAQPTRQATTASPSAPSLLSRLLKDGSSQMPVAYMDASDAYSDDSDDDMEEGDCA 337
           S+AA AA  T   T    +A S+++  L   +S  P   +D      D+ DD+ +  DC 
Sbjct: 93  STAAAAAAATATTTEVVVAAASVITNHLSSPTSGTPPHGLDV-----DEGDDECD--DCE 145

Query: 338 EAGDEETEEDGSIPIPPTSESWLKQQR 418
           E  D+  + DG I  P  ++SW + ++
Sbjct: 146 EDEDDPVDNDGHIAAPTPNKSWAENKQ 172



EST assemble image


clone accession position
1 MX244e11_r BP091806 1 476
2 HC094c04_r AV639040 8 479
3 HC045a06_r AV635331 8 461




Chlamydomonas reinhardtii
Kazusa DNA Research Institute