Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001999A_C02 KCC001999A_c02
(600 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK53449.1| unknown [Streptomyces aureofaciens] 32 0.006
ref|ZP_00136162.1| COG1566: Multidrug resistance efflux pump [Ps... 39 0.043
gb|AAB57887.1| single stranded DNA-binding protein [Shewanella s... 37 0.21
ref|NP_666194.1| hypothetical protein MGC38716 [Mus musculus] gi... 37 0.28
dbj|BAC31912.1| unnamed protein product [Mus musculus] 37 0.28
>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
Length = 579
Score = 32.0 bits (71), Expect(2) = 0.006
Identities = 24/59 (40%), Positives = 27/59 (45%)
Frame = -3
Query: 430 RTPAARSELPHPHRPVAGATRAPQKNNTGRTKPAGLNQLAGIRQQCPCRAAPGPSMRPP 254
R P R+ P PH P A R P T R +P A R + P RAAPGPS P
Sbjct: 510 RPPPPRA--PPPHHPSA---RNPSARATPRPRPPP-RPSAAARPEPPPRAAPGPSGTAP 562
Score = 29.3 bits (64), Expect(2) = 0.006
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Frame = -1
Query: 537 PVVGPSSLASPPAPPVRQGP-------PFTRTSRTGTAS--SDPGGPP 421
P P +PP P R+GP P TR GT + S PG PP
Sbjct: 457 PARRPPPPPTPPVPRARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPP 504
>ref|ZP_00136162.1| COG1566: Multidrug resistance efflux pump [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 622
Score = 39.3 bits (90), Expect = 0.043
Identities = 46/159 (28%), Positives = 56/159 (34%), Gaps = 27/159 (16%)
Frame = -2
Query: 464 PPVPVRPPLTLEDPRSTVRTSSPSPAGCGRHAGATKK*H-RQD*TSRTKP---------- 318
PP V PP E + +R P GR AG ++ H R D R P
Sbjct: 3 PPAAVLPPAVAEAAQPDLRPDHP-----GRRAGGARREHGRADRIPRRNPRLPPPAERTH 57
Query: 317 -------ACRNT---------PAMSLPGSAGSKYAPTTALFPTKLSASIGGKEQL*LLVV 186
A R PA LP AG + P P +L + GG LL
Sbjct: 58 GVAGGSSAARRAAAGGGPLQHPAGRLPLGAGLRPVPVRRCLP-ELQPTDGGLGARGLLPA 116
Query: 185 SWA*GARCAEPGYPQAQQLSKVLRGHYGPLSLELLYFRP 69
G R A+ G A L + R H G L L L+ RP
Sbjct: 117 DAVTGGRPADGGDSAADALHQRHRAHRGALRLSLVQHRP 155
>gb|AAB57887.1| single stranded DNA-binding protein [Shewanella sp. SC2A]
Length = 242
Score = 37.0 bits (84), Expect = 0.21
Identities = 23/72 (31%), Positives = 33/72 (44%)
Frame = -3
Query: 346 GRTKPAGLNQLAGIRQQCPCRAAPGPSMRPPQRYFPQNCPRV*EGRSSYDCLS*AGPEER 167
G+ + +G N + QQ R AP P RPPQ + Q P G ++Y AG +
Sbjct: 126 GQGQSSGQNAGQNMGQQ-QSRPAPAPQARPPQAQYNQTAPAA--GNAAYQAQPNAGQQGG 182
Query: 166 GAQSQDTPRRSS 131
G Q Q P + +
Sbjct: 183 GYQQQSAPAQQA 194
>ref|NP_666194.1| hypothetical protein MGC38716 [Mus musculus]
gi|20072554|gb|AAH27072.1| Hypothetical protein MGC38716
[Mus musculus]
Length = 516
Score = 36.6 bits (83), Expect = 0.28
Identities = 30/109 (27%), Positives = 44/109 (39%), Gaps = 5/109 (4%)
Frame = -2
Query: 512 PLLLLPPSAKVRHSPVPPVPVRPPLTLEDPRSTVRTSSPSPAGCGRHA-----GATKK*H 348
P L PP+ + SP P P P T++PS A C + G+ H
Sbjct: 275 PRTLSPPATRKTTSPPCQHPQSNPAPGSPPVRRTETNTPSSASCSSPSVSPSRGSKDSIH 334
Query: 347 RQD*TSRTKPACRNTPAMSLPGSAGSKYAPTTALFPTKLSASIGGKEQL 201
+D + T A RNT ++ P + T+LF K S+S + L
Sbjct: 335 SEDSEATTAKASRNTCSIFYPAA--------TSLFEAKSSSSTSHPQML 375
>dbj|BAC31912.1| unnamed protein product [Mus musculus]
Length = 537
Score = 36.6 bits (83), Expect = 0.28
Identities = 30/109 (27%), Positives = 44/109 (39%), Gaps = 5/109 (4%)
Frame = -2
Query: 512 PLLLLPPSAKVRHSPVPPVPVRPPLTLEDPRSTVRTSSPSPAGCGRHA-----GATKK*H 348
P L PP+ + SP P P P T++PS A C + G+ H
Sbjct: 296 PRTLSPPATRKTTSPPCQHPQSNPAPGSPPVRRTETNTPSSASCSSPSVSPSRGSKDSIH 355
Query: 347 RQD*TSRTKPACRNTPAMSLPGSAGSKYAPTTALFPTKLSASIGGKEQL 201
+D + T A RNT ++ P + T+LF K S+S + L
Sbjct: 356 SEDSEATTAKASRNTCSIFYPAA--------TSLFEAKSSSSTSHPQML 396
