Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001993A_C01 KCC001993A_c01
(815 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_867265.1| probable IgA-specific metalloendopeptidase [Pir... 32 9.5
>ref|NP_867265.1| probable IgA-specific metalloendopeptidase [Pirellula sp.]
gi|32444809|emb|CAD74811.1| probable IgA-specific
metalloendopeptidase [Pirellula sp.]
Length = 1932
Score = 32.3 bits (72), Expect = 9.5
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 196 LYPLAVRHRWSLIRLHMLKNSRPSIIFAAGDTSIAAVQKRYGKIQPADPW 345
L P+A R SL ++H+++ + PS + A GD + V + G++ +D W
Sbjct: 198 LLPIAPIQRASLTKIHLIQPNPPSAMVAEGD--LVGVVAKIGRLGRSDVW 245
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 768,954,483
Number of Sequences: 1537769
Number of extensions: 16185328
Number of successful extensions: 38151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38141
length of database: 498,525,298
effective HSP length: 122
effective length of database: 310,917,480
effective search space used: 46326704520
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
