Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001975A_C01 KCC001975A_c01
(527 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_872434.1| hypothetical protein FLJ40083 [Homo sapiens] gi... 43 0.003
ref|XP_300847.1| hypothetical protein XP_300847 [Homo sapiens] 43 0.003
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 41 0.011
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 41 0.011
dbj|BAA83714.1| RNA binding protein [Homo sapiens] 41 0.011
>ref|NP_872434.1| hypothetical protein FLJ40083 [Homo sapiens]
gi|21757144|dbj|BAC05035.1| unnamed protein product
[Homo sapiens]
Length = 611
Score = 42.7 bits (99), Expect = 0.003
Identities = 22/70 (31%), Positives = 38/70 (53%)
Frame = +2
Query: 296 RSTTDVGATAGANPFNIPADEEIFRFREEERARKEQDKLIAQTMRVADKTTFAAQMQATA 475
R + G ANPF++ D + F R++ER + ++ +TMRV K T+++++ A
Sbjct: 40 RKNEEHGPDPSANPFHLSGDVDFFLLRDQERNKALSERQQQKTMRVHQKMTYSSKVSAKH 99
Query: 476 TADARTLLRE 505
T+ R L E
Sbjct: 100 TSLRRQLQLE 109
>ref|XP_300847.1| hypothetical protein XP_300847 [Homo sapiens]
Length = 244
Score = 42.7 bits (99), Expect = 0.003
Identities = 22/70 (31%), Positives = 38/70 (53%)
Frame = +2
Query: 296 RSTTDVGATAGANPFNIPADEEIFRFREEERARKEQDKLIAQTMRVADKTTFAAQMQATA 475
R + G ANPF++ D + F R++ER + ++ +TMRV K T+++++ A
Sbjct: 40 RKNEEHGPDPSANPFHLSGDVDFFLLRDQERNKALSERQQQKTMRVHQKMTYSSKVSAKH 99
Query: 476 TADARTLLRE 505
T+ R L E
Sbjct: 100 TSLRRQLQLE 109
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 40.8 bits (94), Expect = 0.011
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 255 RFTTRRPCPARPRGAAQPMWVPPRGQTRSTSQRMK---KSSGFGRRSGPGRSRTSSSRKR 425
R +R PAR G ++ RG++RS + + +S RRSG RSRT + R R
Sbjct: 632 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 691
Query: 426 CAWRTRRHSPHRCRQRQLPMPGHSYESSGHQRG 524
RT R R R R L G S+ + +RG
Sbjct: 692 SRSRTPRRG--RSRSRSLVRRGRSHSRTPQRRG 722
Score = 33.1 bits (74), Expect = 2.3
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = +3
Query: 255 RFTTRRPCPARPRGAAQPMWVPPRGQTRSTSQRMKKSSGFGRRSGPGRSRTSSSRKRCAW 434
R +R PAR + R +TRS +R +S RRSG RSRT + R R
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRS 660
Query: 435 RT 440
RT
Sbjct: 661 RT 662
Score = 32.7 bits (73), Expect = 3.0
Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 261 TTRRPCPARPRGAAQPMWVPPRGQTRSTSQ---RMKKSSGFGRRSGPGR---SRTSSSRK 422
TTRR R R + R ++RS S+ R + SG+ RS P R SRTSS R+
Sbjct: 1784 TTRR----RDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRS-PARQESSRTSSRRR 1838
Query: 423 RCAWRTRRHSPHRCRQRQLPMP 488
R RT S R R R P P
Sbjct: 1839 RGRSRTPPTSRKRSRSRTSPAP 1860
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 40.8 bits (94), Expect = 0.011
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 255 RFTTRRPCPARPRGAAQPMWVPPRGQTRSTSQRMK---KSSGFGRRSGPGRSRTSSSRKR 425
R +R PAR G ++ RG++RS + + +S RRSG RSRT + R R
Sbjct: 632 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 691
Query: 426 CAWRTRRHSPHRCRQRQLPMPGHSYESSGHQRG 524
RT R R R R L G S+ + +RG
Sbjct: 692 SRSRTPRRG--RSRSRSLVRRGRSHSRTPQRRG 722
Score = 33.1 bits (74), Expect = 2.3
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = +3
Query: 255 RFTTRRPCPARPRGAAQPMWVPPRGQTRSTSQRMKKSSGFGRRSGPGRSRTSSSRKRCAW 434
R +R PAR + R +TRS +R +S RRSG RSRT + R R
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRS 660
Query: 435 RT 440
RT
Sbjct: 661 RT 662
Score = 32.7 bits (73), Expect = 3.0
Identities = 32/82 (39%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 261 TTRRPCPARPRGAAQPMWVPPRGQTRSTSQ---RMKKSSGFGRRSGPGR---SRTSSSRK 422
TTRR R R + R ++RS S+ R + SG+ RS P R SRTSS R+
Sbjct: 1784 TTRR----RDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRS-PARQESSRTSSRRR 1838
Query: 423 RCAWRTRRHSPHRCRQRQLPMP 488
R RT S R R R P P
Sbjct: 1839 RGRSRTPPTSRKRSRSRTSPAP 1860
>dbj|BAA83714.1| RNA binding protein [Homo sapiens]
Length = 956
Score = 40.8 bits (94), Expect = 0.011
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 255 RFTTRRPCPARPRGAAQPMWVPPRGQTRSTSQRMK---KSSGFGRRSGPGRSRTSSSRKR 425
R +R PAR G ++ RG++RS + + +S RRSG RSRT + R R
Sbjct: 597 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 656
Query: 426 CAWRTRRHSPHRCRQRQLPMPGHSYESSGHQRG 524
RT R R R R L G S+ + +RG
Sbjct: 657 SRSRTPRRG--RSRSRSLVRRGRSHSRTPQRRG 687
Score = 33.1 bits (74), Expect = 2.3
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = +3
Query: 255 RFTTRRPCPARPRGAAQPMWVPPRGQTRSTSQRMKKSSGFGRRSGPGRSRTSSSRKRCAW 434
R +R PAR + R +TRS +R +S RRSG RSRT + R R
Sbjct: 566 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRS 625
Query: 435 RT 440
RT
Sbjct: 626 RT 627
