Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001968A_C01 KCC001968A_c01
(552 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00057775.1| COG1205: Distinct helicase family with a uniq... 42 0.004
gb|AAO52512.1| similar to Streptococcus pneumoniae. Cell wall su... 42 0.007
gb|AAH37281.1| RNTRE protein [Homo sapiens] 41 0.012
ref|NP_902121.1| hypothetical protein CV2451 [Chromobacterium vi... 41 0.012
gb|AAM74413.1|AC120497_13 Hypothetical protein similar to putati... 40 0.016
>ref|ZP_00057775.1| COG1205: Distinct helicase family with a unique C-terminal domain
including a metal-binding cysteine cluster [Thermobifida
fusca]
Length = 1958
Score = 42.4 bits (98), Expect = 0.004
Identities = 45/130 (34%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Frame = +3
Query: 144 RPAASVPRAPASSGARRRAKAASCLAVLRL-*RARSLPRRRPLQPTPPGRAWEALPPP-- 314
RPAA P P + AR R A A LR RA + RRRP +P P R P P
Sbjct: 183 RPAAPHPHRPRPAAARARRTAGGAGAQLRARRRATAGRRRRPARPRRPLRRLRRTPRPHA 242
Query: 315 ---GRRRDCSRRRASRAAAWTYRARP-RCRRWQGAQAWRPRF*PSPAASSAHQASATEAH 482
G+ R RR + AA + P R R +GAQ R AA A
Sbjct: 243 RGSGQGRVAGRRSGAPGAAGRRQPLPGRPRPVRGAQQHR-------AAQGALPGGHRPEA 295
Query: 483 ERRGSRRVKR 512
+RRG R R
Sbjct: 296 DRRGVRPAPR 305
>gb|AAO52512.1| similar to Streptococcus pneumoniae. Cell wall surface anchor family
protein [Dictyostelium discoideum]
Length = 1806
Score = 41.6 bits (96), Expect = 0.007
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +2
Query: 134 LTHTASRERAPRTSLFGSSAPRKSGFLFGSSPPVTSAFTTA-----SSPTSANTTWARMG 298
L TA+ P TSLFGS+ P S SS TS T + +S +S++T+ + G
Sbjct: 1090 LASTATTTATPTTSLFGSTTPSSSSSSSSSSSSTTSTTTPSNSLFGTSSSSSSTSSSLFG 1149
Query: 299 STSTTWAPQGLQQTQSLTRGSMDIPRST 382
ST++ P L T + + S ++T
Sbjct: 1150 STTSATTPSSLFGTTTTSSDSKSETKTT 1177
Score = 40.0 bits (92), Expect = 0.021
Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Frame = +2
Query: 143 TASRERAPRTSLFGSSAPRKSGFLFGSSPP-VTSAFTTASSPTSANTTWARMGSTSTTWA 319
T S P LFGS+ P S LFG+S P TS TT++S T + + S +TT
Sbjct: 1343 TTSTTTTPPNGLFGSTTP--STALFGTSTPATTSTLTTSTSTTPSTGLFGSSSSIATTTP 1400
Query: 320 PQGL-QQTQSLTRGSM-------DIPRSTEVPPLARRSSMEASLLTFSRSFKRTSGFGN* 475
GL T S T + ST P SS ++ L F S TS +
Sbjct: 1401 STGLFGSTSSSTTNTAPSTGLFGSTTTSTTATPFGSSSSTPSTGL-FGSSSSSTSSSLSS 1459
Query: 476 GARAAREPT 502
+ A +PT
Sbjct: 1460 SSTTATQPT 1468
Score = 39.7 bits (91), Expect = 0.027
Identities = 30/95 (31%), Positives = 46/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 53 TSATSRLGVNCSANLFALPLAIMDIVHLTHTASRERAPRTSLFGSSAPRKSGFLFG--SS 226
TS T G+ S++ A + T +++ AP T LFGS+ + FG SS
Sbjct: 1380 TSTTPSTGLFGSSSSIATTTPSTGLFGSTSSSTTNTAPSTGLFGSTTTSTTATPFGSSSS 1439
Query: 227 PPVTSAFTTASSPTSANTTWARMGSTSTTWAPQGL 331
P T F ++SS TS++ + S++T P GL
Sbjct: 1440 TPSTGLFGSSSSSTSSSLS----SSSTTATQPTGL 1470
Score = 37.7 bits (86), Expect = 0.10
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Frame = +2
Query: 53 TSATSRLGVNCSANLFALPLAIMDIVHLTHTASRERAPRTSLFGSSAPRKSGFLFGSSPP 232
+S+TS L S LF AS P T LFGS+ +G LFG+S
Sbjct: 1243 SSSTSSLTTTPSTGLFG--------------ASSSTTPSTGLFGSATTPSTG-LFGASSS 1287
Query: 233 VTSAFTTASSPTSANTT--WARMGSTSTTWAPQGLQQTQSLTRGSMDIPRST 382
+S+ ++SS TS TT GST+ + G T + T S + ST
Sbjct: 1288 SSSSSISSSSTTSTTTTPSTGLFGSTTPSTGLFGSTTTAATTTPSTGLFGST 1339
Score = 34.7 bits (78), Expect = 0.88
Identities = 24/71 (33%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 143 TASRERAPRTSLFGSSAPRKSG---FLFGSSPPVTSAFTTASSPTSANTTWARMGSTSTT 313
T S P T LFGS+AP S S+P ++ F + PTS+ TT + S++
Sbjct: 1530 TTSSTTTPSTGLFGSAAPSTSSPFSIPTSSTPATSNPFGSNPFPTSSPTTVSSTPSSNPF 1589
Query: 314 WAPQGLQQTQS 346
AP T S
Sbjct: 1590 GAPSLSNSTSS 1600
Score = 34.7 bits (78), Expect = 0.88
Identities = 40/128 (31%), Positives = 51/128 (39%), Gaps = 27/128 (21%)
Frame = +2
Query: 137 THTASRERAPRTSLFGSSAPRKSGFL-------------FGSSPPVTSAF--TTASSP-- 265
T S P T LFGSS+ S L FGS+ P T F TTA++P
Sbjct: 1432 TPFGSSSSTPSTGLFGSSSSSTSSSLSSSSTTATQPTGLFGSTAPSTGLFGSTTATNPST 1491
Query: 266 --------TSANTT--WARMGSTSTTWAPQGLQQTQSLTRGSMDIPRSTEVPPLARRSSM 415
TS TT GS+S+T + GL + S T S P + A +S
Sbjct: 1492 GLFGSTTTTSTTTTPSTGLFGSSSSTPSSTGLFGSSSSTTSSTTTPSTGLFGSAAPSTSS 1551
Query: 416 EASLLTFS 439
S+ T S
Sbjct: 1552 PFSIPTSS 1559
>gb|AAH37281.1| RNTRE protein [Homo sapiens]
Length = 215
Score = 40.8 bits (94), Expect = 0.012
Identities = 43/128 (33%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = +3
Query: 153 ASVPRAPASSGARRRAKAASCLAVLRL*RARSLPR-RRPLQPTPPGRA---------WEA 302
A P P+ SGA RR + LR SLPR R + PG + W+
Sbjct: 52 AGGPGRPSRSGAARRGGGGGYRSALR--PIVSLPRGSRRSRAREPGSSPARHLLPPLWKR 109
Query: 303 LPPPGRRRDCSRRRASRAAAWTYRARPRCRRWQGAQAWRPRF*PSPAASSAH-QASATEA 479
PPP R R RAS A T R +P +R Q WR P PAA + + A A
Sbjct: 110 PPPPRAARPGPRLRASGPARLTGRRQPSPQRPQPPPYWRG---PFPAARALRSRTPAVRA 166
Query: 480 HERRGSRR 503
R G R
Sbjct: 167 PARLGDAR 174
>ref|NP_902121.1| hypothetical protein CV2451 [Chromobacterium violaceum ATCC 12472]
gi|34103761|gb|AAQ60122.1| hypothetical protein CV2451
[Chromobacterium violaceum ATCC 12472]
Length = 247
Score = 40.8 bits (94), Expect = 0.012
Identities = 47/155 (30%), Positives = 59/155 (37%), Gaps = 25/155 (16%)
Frame = +3
Query: 138 LTRPAASVPRAPASSGARRRAKAASCLAVLRL*RARSLPRRRPLQPTPPGRAWEALPPPG 317
+ R S P P + R A++ R AR+LPRRR + P A P
Sbjct: 72 ICRRRPSQPPGPRNRSPCRTARSRRWRCRRRAGAARALPRRRSGAGSRP-----AAPGCW 126
Query: 318 RRRDCS--RRRASRAAAWTYRARP-----------RCRR----------WQGAQAWRPRF 428
R DCS RRR+ R+AA RARP RCRR G W
Sbjct: 127 PRTDCSRARRRSRRSAAGCRRARPDSCRTACPRSGRCRRNSCSGTPDASHGGRDGWTASP 186
Query: 429 *PSPAASSAHQA--SATEAHERRGSRRVKRSSAMG 527
P PA+ S + T A + R + S A G
Sbjct: 187 APGPASRSCRRRHYGCTAAPRNEKTMRRRTSPAAG 221
Score = 37.7 bits (86), Expect = 0.10
Identities = 44/128 (34%), Positives = 51/128 (39%), Gaps = 2/128 (1%)
Frame = +3
Query: 141 TRPA--ASVPRAPASSGARRRAKAASCLAVLRL*RARSLPRRRPLQPTPPGRAWEALPPP 314
T PA AS P +P+S A L R RS+ RRRP QP P
Sbjct: 34 TGPASPASAPASPSSPNAADPTCRLWRWCRLPGRRIRSICRRRPSQPPGPRNRSPCRTAR 93
Query: 315 GRRRDCSRRRASRAAAWTYRARPRCRRWQGAQAWRPRF*PSPAASSAHQASATEAHERRG 494
RR C RRRA A RA PR R G++ P P S A + S A G
Sbjct: 94 SRRWRC-RRRAGAA-----RALPRRRSGAGSRPAAPGCWPRTDCSRARRRSRRSA---AG 144
Query: 495 SRRVKRSS 518
RR + S
Sbjct: 145 CRRARPDS 152
>gb|AAM74413.1|AC120497_13 Hypothetical protein similar to putative retroelements [Oryza
sativa (japonica cultivar-group)]
Length = 716
Score = 40.4 bits (93), Expect = 0.016
Identities = 36/90 (40%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = -3
Query: 394 RRHLGRARYVHAAAREALRLLQSLRRPGGGSASHARP-GGVG*SGRRRGSERARHRRRT- 221
RR LG AR R A+ GGG S A GG G SG RRGS AR R
Sbjct: 24 RRQLGTARLGFKTGRPAMG-------SGGGERSLATASGGAGGSGDRRGSGGARRRAADS 76
Query: 220 --AKQEAAFARRRAPEEAGA--RGTLAAGR 143
AK+ AA R R E G+ RG+ + G+
Sbjct: 77 GGAKRRAARQRERGREGVGSSPRGSASVGK 106
