Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001954A_C01 KCC001954A_c01
(740 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_609509.2| CG31705-PA [Drosophila melanogaster] gi|5901828... 34 2.7
pir||QQBE22 membrane antigen gp220 - human herpesvirus 4 (strain... 33 3.6
ref|NP_207010.1| succinyl-diaminopimelate desuccinylase (dapE) [... 33 3.6
emb|CAA67558.1| gp340 [Human herpesvirus 4] 33 6.1
>ref|NP_609509.2| CG31705-PA [Drosophila melanogaster]
gi|5901828|gb|AAD55422.1|AF181636_1 BcDNA.GH07269
[Drosophila melanogaster] gi|22946256|gb|AAF53106.2|
CG31705-PA [Drosophila melanogaster]
Length = 682
Score = 33.9 bits (76), Expect = 2.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 291 MLLLVHLAQSNSTWSTIHRRITRKATSHRFADIHGWVAS*PAVPCHHAAPVP 136
++L + +++ W + R ++S+R H + A +VP HHAAP P
Sbjct: 18 LILALTTEDAHAKWKSTGSRSRTSSSSNRRTSSHSYSAPSHSVPSHHAAPAP 69
>pir||QQBE22 membrane antigen gp220 - human herpesvirus 4 (strain B95-8)
Length = 710
Score = 33.5 bits (75), Expect = 3.6
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Frame = -2
Query: 424 NGHETGKT-TQIHWNCILEHHALL-------GRTSQGAMPGDSYLAVRQRELNALIGTFG 269
NG E+G+ TQ+ I HH G TSQ + PG+S + + E+N GT
Sbjct: 497 NGTESGENITQVTPASISTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGT-- 554
Query: 268 AK*QYVEHNPPKNHTQSDKPPLCRHTWLGS*LACRTVSSRGASTAARAG 122
PP+N T P G A TV+S G + G
Sbjct: 555 ---------PPQNATSPQAPS-------GQKTAVPTVTSTGGKANSTTG 587
>ref|NP_207010.1| succinyl-diaminopimelate desuccinylase (dapE) [Helicobacter pylori
26695] gi|7465381|pir||D64546 succinyl-diaminopimelate
desuccinylase - Helicobacter pylori (strain 26695)
gi|2313302|gb|AAD07280.1| succinyl-diaminopimelate
desuccinylase (dapE) [Helicobacter pylori 26695]
Length = 383
Score = 33.5 bits (75), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +3
Query: 519 PERHWQGSPFVPCVKFDY*LHKMSREMKSGVG 614
P HWQ PF P +K + + +++MK GVG
Sbjct: 85 PGNHWQSDPFKPVIKEGFLYGRGAQDMKGGVG 116
>emb|CAA67558.1| gp340 [Human herpesvirus 4]
Length = 856
Score = 32.7 bits (73), Expect = 6.1
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Frame = -2
Query: 424 NGHETG--KTTQIHWNCILEHHALL-------GRTSQGAMPGDSYLAVRQRELNALIGTF 272
+ H TG TQ+ I HH G TSQ + PG+S + + E+N GT
Sbjct: 642 SAHPTGGENITQVTPASISTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGT- 700
Query: 271 GAK*QYVEHNPPKNHTQSDKPPLCRHTWLGS*LACRTVSSRGASTAARAG 122
PPKN T P G A TV+S G + G
Sbjct: 701 ----------PPKNATSPQAPS-------GQKTAVPTVTSTGGKANSTTG 733
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 782,202,186
Number of Sequences: 1537769
Number of extensions: 17768994
Number of successful extensions: 53364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53357
length of database: 498,525,298
effective HSP length: 121
effective length of database: 312,455,249
effective search space used: 39056906125
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
