Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001919A_C01 KCC001919A_c01
(1107 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83836.1| LTR retrotransposable element~partially supporte... 128 2e-28
emb|CAD32262.1| SI:dZ125J23.11 (Gypsy Danio rerio 1 polyprotein) 121 2e-26
gb|AAL75982.1|AF466203_11 putative prpol [Zea mays] 119 9e-26
sp|P27401|POL_SFV3L POL polyprotein [Contains: Protease ; Revers... 117 5e-25
sp|P23074|POL_SFV1 POL polyprotein [Contains: Protease ; Reverse... 117 5e-25
>dbj|BAB83836.1| LTR retrotransposable element~partially supported by GENSCAN [Oryzias
latipes]
Length = 1498
Score = 128 bits (321), Expect = 2e-28
Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 2/213 (0%)
Frame = +1
Query: 121 GHLGERRTLALCQLGYWWAGQRATVQGIVQRCKLCDMANTGGMVRPVELQPLP-IRGMFY 297
GHL +++L + W ++ C++C + G+ R LQPLP I F
Sbjct: 664 GHLAFQKSLNRIANRFVWPAMYTQLKEFCASCEICQLTAPQGVAR-APLQPLPLIETPFD 722
Query: 298 RWGIDLAGNLHPTSPDGYTYVMVCVEHFTKWIELFPLTTKSASETARGLVELLTRFGSPA 477
R G+D+ G L +S G+ Y++V ++ T++ E FPL + A + A L++L +R G P
Sbjct: 723 RIGMDIVGPLEKSS-SGHKYILVICDYATRYPEAFPLRSVKARQIANCLIQLFSRVGIPK 781
Query: 478 EVTTDRGTEFEGP-FQALCEANAIDHRRTQPDHPQANGLAERMVQVVKAALRKHCRSTQS 654
E+ TD GT F + + + +T P HPQ +GL ER Q +K LRK T +
Sbjct: 782 EILTDCGTNFLSKLLKQVYSLLGVKGIKTTPYHPQTDGLVERFNQTLKTMLRKFVSETGA 841
Query: 655 NDTWDKALPWLALAYRCSPQASTRYSPYKLLYG 753
+ WD+ LP+L AYR PQAST +SP++LLYG
Sbjct: 842 D--WDQWLPYLLFAYREVPQASTGFSPFELLYG 872
>emb|CAD32262.1| SI:dZ125J23.11 (Gypsy Danio rerio 1 polyprotein)
Length = 1398
Score = 121 bits (304), Expect = 2e-26
Identities = 95/321 (29%), Positives = 150/321 (46%), Gaps = 5/321 (1%)
Frame = +1
Query: 61 TRVCPPPEARDAIVQQTHE---IGHLGERRTLALCQLGYWWAGQRATVQGIVQRCKLCDM 231
T + P R+ +++ H GHLG T+ + + W G V+ Q C +C
Sbjct: 483 TLLVVPRTKRETVLELAHTHPMAGHLGAANTVKRIRDRFHWPGLDGEVKRYCQACDICQR 542
Query: 232 ANTGGMVRPVELQPLPIRGM-FYRWGIDLAGNLHPTSPDGYTYVMVCVEHFTKWIELFPL 408
+ P L PLPI + F R G+DL G L P S G+ +++V +++ T++ E PL
Sbjct: 543 TSPQ-RPPPSPLIPLPIIDVPFTRIGMDLVGPL-PKSARGHEHILVILDYATRYPEAIPL 600
Query: 409 TTKSASETARGLVELLTRFGSPAEVTTDRGTEFEGPFQA-LCEANAIDHRRTQPDHPQAN 585
++S A+ L L +R G P E+ TD+GT F A LC + +T HPQ +
Sbjct: 601 RKATSSAIAKELFLLCSRVGIPTEILTDQGTPFMSRLMADLCHLLKVKQLKTSVYHPQTD 660
Query: 586 GLAERMVQVVKAALRKHCRSTQSNDTWDKALPWLALAYRCSPQASTRYSPYKLLYGVDPI 765
GL ER + +K LR+ + WD +P++ R PQAST ++P++LL+G P
Sbjct: 661 GLVERFNKTLKQMLRRVV--AEDGRDWDLMIPYVLFGIREVPQASTGFTPFELLFGRQPR 718
Query: 766 IPPAVRPRFEEHELAFTGDGSEQAYAEALLQRSEWLRRHAPAAAGNLLIAQHRDTQRYAL 945
V + E E A +++ E + E + + P ++ QH + A
Sbjct: 719 GLLDVARQAWEQEPA-----PQRSVIEHVRDMRERIDKIMP------IVKQHLTEAQRAQ 767
Query: 946 TRSGGYRARALEFVPGDYVYL 1008
R A+ EF PGD V +
Sbjct: 768 QRLYNRPAQPREFHPGDKVMI 788
>gb|AAL75982.1|AF466203_11 putative prpol [Zea mays]
Length = 1854
Score = 119 bits (298), Expect = 9e-26
Identities = 87/301 (28%), Positives = 139/301 (45%), Gaps = 12/301 (3%)
Frame = +1
Query: 1 RAASYRWTG--EQLIRLMPDGNTRVCPPPEARDAIVQQTHE--IGHLGERRTLA--LCQL 162
RA S+ G E+L P G + C ++Q+ H GH R L +
Sbjct: 1533 RAKSFVLLGDEEELYHRSPSGILQRCISIAEGRELLQEIHSGACGHHAAPRALVGNAFRQ 1592
Query: 163 GYWWAGQRATVQGIVQRCKLCDMANTGGMVRPVELQPLPIRGMFYRWGIDLAGNLHPTSP 342
G++W A IV+ C+ C + LQ +PI F WG+DL G L +P
Sbjct: 1593 GFYWPTAVADATRIVRTCEGCQFYAKRTHLPAQALQTIPITWPFAVWGLDLVGPLQK-AP 1651
Query: 343 DGYTYVMVCVEHFTKWIELFPLTTKSASETARGLVELLTRFGSPAEVTTDRGTEFEG-PF 519
GYT+++V ++ F+KWIE+ PL + + + ++ RFG P + TD GT+F G F
Sbjct: 1652 GGYTHLLVAIDKFSKWIEVRPLNSIRSEQAVAFFTNIIHRFGVPNSIITDNGTQFTGKKF 1711
Query: 520 QALCEANAIDHRRTQPDHPQANGLAERMVQVVKAALRKHCRS--TQSNDTWDKALPWLAL 693
CE + I HP +NG ER ++ L+ + + W K LP +
Sbjct: 1712 LDFCEDHHIRVDWAAVAHPMSNGQVERANGMILQGLKPRIYNDLNKFGKRWMKELPSVVW 1771
Query: 694 AYRCSPQASTRYSPYKLLYGVDPIIPPAVR---PRFEEHELAFTGDGSEQAYAEALLQRS 864
+ R +P +T ++P+ L+YG + I+P + PR A+T ++ + E+L Q
Sbjct: 1772 SLRTTPSRATGFTPFFLVYGAEAILPTDLEYGSPRAR----AYTEQSNQASREESLDQLE 1827
Query: 865 E 867
E
Sbjct: 1828 E 1828
>sp|P27401|POL_SFV3L POL polyprotein [Contains: Protease ; Reverse transcriptase ;
Endonuclease] gi|74641|pir||GNLJLK pol polyprotein -
simian foamy virus (type 3, strain LK3)
gi|334872|gb|AAA47796.1| pol polyprotein [Simian foamy
virus type 3]
Length = 1157
Score = 117 bits (292), Expect = 5e-25
Identities = 77/254 (30%), Positives = 119/254 (46%), Gaps = 1/254 (0%)
Frame = +1
Query: 13 YRWTGEQLIRLMPDGNTRVCPPPEARDAIVQQTHEIGHLGERRTLALCQLGYWWAGQRAT 192
Y+ Q++ P+G R+ PP R I+ Q H I H G T YWW R
Sbjct: 794 YQLENGQVMVTRPNGK-RIIPPKSDRPQIILQAHNIAHTGRDSTFLKVSSKYWWPNLRKD 852
Query: 193 VQGIVQRCKLCDMANTGGMVRPVELQPLPIRGMFYRWGIDLAGNLHPTSPDGYTYVMVCV 372
V ++++CK C + N + P L+P F ++ ID G L P+ +GY +V+V V
Sbjct: 853 VVKVIRQCKQCLVTNAATLAAPPILRPERPVKPFDKFFIDYIGPLPPS--NGYLHVLVVV 910
Query: 373 EHFTKWIELFPLTTKSASETARGLVELLTRFGSPAEVTTDRGTEF-EGPFQALCEANAID 549
+ T ++ L+P S S T + L +LT P + +D+G F F + I
Sbjct: 911 DSMTGFVWLYPTKAPSTSATVKAL-NMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQ 969
Query: 550 HRRTQPDHPQANGLAERMVQVVKAALRKHCRSTQSNDTWDKALPWLALAYRCSPQASTRY 729
+ P HPQ++G ER +K L K + W LP + LA S S++Y
Sbjct: 970 LEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAK--WYDLLPVVQLALNNSYSPSSKY 1027
Query: 730 SPYKLLYGVDPIIP 771
+P++LL+G+D P
Sbjct: 1028 TPHQLLFGIDSNTP 1041
>sp|P23074|POL_SFV1 POL polyprotein [Contains: Protease ; Reverse transcriptase ;
Endonuclease] gi|94208|pir||S18738 pol protein - simian
foamy virus (fragment)
Length = 1161
Score = 117 bits (292), Expect = 5e-25
Identities = 80/256 (31%), Positives = 122/256 (47%), Gaps = 3/256 (1%)
Frame = +1
Query: 13 YRWTGEQ--LIRLMPDGNTRVCPPPEARDAIVQQTHEIGHLGERRTLALCQLGYWWAGQR 186
Y++T E+ LI P+G R+ PP R+ I+ H I H G T YWW R
Sbjct: 790 YKYTLEENKLIVERPNG-IRIVPPKADREKIISTAHNIAHTGRDATFLKVSSKYWWPNLR 848
Query: 187 ATVQGIVQRCKLCDMANTGGMVRPVELQPLPIRGMFYRWGIDLAGNLHPTSPDGYTYVMV 366
V +++CK C + N + P L+P+ F ++ ID G L P+ +GY +V+V
Sbjct: 849 KDVVKSIRQCKQCLVTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLPPS--NGYLHVLV 906
Query: 367 CVEHFTKWIELFPLTTKSASETARGLVELLTRFGSPAEVTTDRGTEF-EGPFQALCEANA 543
V+ T ++ L+P S S T + L +LT P + +D+G F F +
Sbjct: 907 VVDSMTGFVWLYPTKAPSTSATVKAL-NMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKG 965
Query: 544 IDHRRTQPDHPQANGLAERMVQVVKAALRKHCRSTQSNDTWDKALPWLALAYRCSPQAST 723
I + P HPQ++G ER +K L K + W LP + LA S S+
Sbjct: 966 IQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAK--WYDLLPVVQLALNNSYSPSS 1023
Query: 724 RYSPYKLLYGVDPIIP 771
+Y+P++LL+GVD P
Sbjct: 1024 KYTPHQLLFGVDSNTP 1039
