KCC001917A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001917A_C01 KCC001917A_c01
gGAGCCTCGTGCAAGCAATTAGTGCTTGCCAGTTTTGCCGACCATGTTTGCCCTTCGCGC
TCCTGTGGCCCGGCCCTCCGCCGCTCGGAGTGTGCAGTCTGGTGTAGCCAGCCGTGTGCA
GCTGCGTCGTGCCCCGCGCGGCTAAGACCGAGGAGGTTTGAGGCTGCTACCAACGGTGCC
GCTGCCTCGAACGGCCATGCTTCGGCCAACATGATGCAGTTCGACGAGCTGTCTTGATAT
CATTCGGCTGGTTGCACGATACCGACATTGTCGAGTTCGAGCTGAAGAGCAAGCGTTTCA
GCCTGAGCTGTGCGCAAGAAGGAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001917A_C01 KCC001917A_c01
         (325 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00013887.1| COG0596: Predicted hydrolases or acyltransfer...    37  0.074
ref|NP_771683.1| bll5043 [Bradyrhizobium japonicum] gi|27353308|...    35  0.37
gb|AAO01072.1| CG30421-PA [Drosophila littoralis]                      34  0.48
sp|P47877|IBP2_MOUSE Insulin-like growth factor binding protein ...    34  0.62
ref|NP_179155.1| RING zinc finger protein -related [Arabidopsis ...    33  0.82

>ref|ZP_00013887.1| COG0596: Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily) [Rhodospirillum rubrum]
          Length = 271

 Score = 37.0 bits (84), Expect = 0.074
 Identities = 28/94 (29%), Positives = 42/94 (43%), Gaps = 9/94 (9%)
 Frame = -3

Query: 296 TLALQLELDNVGIVQPA-E*YQDSSSNCIMLAEAWPFEAAAPLVAASNLL--GLSRAGHD 126
           T  L   LD +GI QP    + D ++  ++ A A+P  A A +  A+++    ++ AG D
Sbjct: 90  TRVLPAVLDRLGIDQPVLVGHSDGATLALLFAAAFPTRAKAVVSIAAHVFVEEITLAGID 149

Query: 125 AAAHGWLHQTAHSERRRAGPQEREG------QTW 42
           AA H W H        R      EG      +TW
Sbjct: 150 AAVHAWTHGDLRDRLSRHHGANTEGAFRGWAETW 183

>ref|NP_771683.1| bll5043 [Bradyrhizobium japonicum] gi|27353308|dbj|BAC50308.1|
           bll5043 [Bradyrhizobium japonicum USDA 110]
          Length = 1064

 Score = 34.7 bits (78), Expect = 0.37
 Identities = 21/47 (44%), Positives = 23/47 (48%)
 Frame = -3

Query: 209 LAEAWPFEAAAPLVAASNLLGLSRAGHDAAAHGWLHQTAHSERRRAG 69
           L E WP E A  L AAS+LLGL+     A    WL       RRR G
Sbjct: 356 LIEGWPAEGAEHLAAASDLLGLA-----APDQAWLALNPVQRRRRIG 397

>gb|AAO01072.1| CG30421-PA [Drosophila littoralis]
          Length = 1336

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 28/88 (31%), Positives = 41/88 (45%)
 Frame = +1

Query: 40   DHVCPSRSCGPALRRSECAVWCSQPCAAASCPARLRPRRFEAATNGAAASNGHASANMMQ 219
            D  CP +      +R   A   + P +AA+ PA   P   E  TNG AAS+G +SA+   
Sbjct: 1109 DEDCPDK------QREAAAARETAPTSAATEPASESPTPAEPTTNGHAASSGTSSAS--- 1159

Query: 220  FDELS*YHSAGCTIPTLSSSS*RASVSA 303
                    S+  ++ +LS  S   SV+A
Sbjct: 1160 --------SSASSVSSLSPRSLNTSVTA 1179

>sp|P47877|IBP2_MOUSE Insulin-like growth factor binding protein 2 precursor (IGFBP-2)
           (IBP-2) (IGF-binding protein 2) gi|2118679|pir||I48601
           insulin-like growth factor binding protein-2 - mouse
           gi|550379|emb|CAA57270.1| insulin-like growth factor
           binding protein-2 [Mus musculus]
          Length = 305

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +3

Query: 36  CRPCLPFALLWPGPPPLGVCS-LV*PAVCSCVVPRAAKTEEV*G-----CYQRCRCLERP 197
           C PC P AL   GPPP   C+ LV    C C    A +  E  G     C Q  RC   P
Sbjct: 40  CPPCTPEALAACGPPPDAPCAELVREPGCGCCSVCARQEGEACGVYIPRCAQTLRCYPNP 99

>ref|NP_179155.1| RING zinc finger protein -related [Arabidopsis thaliana]
           gi|25411642|pir||B84530 probable RING zinc finger
           protein [imported] - Arabidopsis thaliana
           gi|4335719|gb|AAD17397.1| putative RING zinc finger
           protein [Arabidopsis thaliana]
          Length = 704

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 15/39 (38%), Positives = 27/39 (68%), Gaps = 2/39 (5%)
 Frame = -2

Query: 288 SSARTRQCRYRATSRMISRQ--LVELHHVGRSMAVRGSG 178
           S++R+ + R+R +  ++ RQ  L+ L H+GRS+A  G+G
Sbjct: 514 SNSRSHRSRHRRSGLLLERQNELLHLRHIGRSLAADGNG 552



EST assemble image


clone accession position
1 HC071g06_r AV637332 0 335
2 HC025c06_r AV633790 1 258
3 MX013f11_r BP086649 2 341
4 HC029g07_r AV634142 2 229




Chlamydomonas reinhardtii
Kazusa DNA Research Institute