KCC001896A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001896A_C01 KCC001896A_c01
gTAAAGGCATAGCTTGCACTGTTCTGTGGCCGATCAGACTGAGCTGCTGAAGAAATCCTA
TTTGGCCTCTCGCGAAACCTCAGAGCGTCCTCCTGAATTGAGCTCTGCAACACATACGAA
CAAGCATATATAACGCAAAGTGACTTCTAGAAGAGAGTTTGGGGCCTCAGGTTTAAGCAG
TCCCCGCGCTTCACCCGCAAGTCACGGACCAGACTCTCACGGAGCTTCGCTCGCGCGAAG
TTGCCTCCAACTGCCCTGGGCCCGAGCTTGAGGGCTTGAGGAGATTCGAAAGCCGCGTTC
ACTTGAGGGCCTGGCGCCTGGACACTGGCGCGTGTGGGAGGCGCAAAGGAGCTGTGTGCA
TAACGTCACCGCAGCGGAGGGCCTAACGTCATCCGTGGTCTCACCATGAGTGAAGACGGC
GAGAAGGTGTGGCTGTATGTGTACGACCTCACCAACGGCATGGCGGCCACGTTCTCGCCC
ATGCTGCTGGGCCGCCAGATTGAGGCGCTGTACCACACGGnGGTGGTGGTGGGCGGCGTG
GAGTACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001896A_C01 KCC001896A_c01
         (547 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA38435.1| GLP_191_9337_10773 [Giardia lamblia ATCC 50803]         58  7e-08
gb|AAG16855.1|AC069145_4 unknown protein [Oryza sativa] gi|31432...    51  1e-05
ref|NP_187365.1| expressed protein [Arabidopsis thaliana] gi|664...    50  3e-05
gb|AAH45987.1| Similar to DNA segment, Chr 15, Wayne State Unive...    49  6e-05
gb|AAH59442.1| Unknown (protein for MGC:73066) [Danio rerio]           49  6e-05

>gb|EAA38435.1| GLP_191_9337_10773 [Giardia lamblia ATCC 50803]
          Length = 478

 Score = 58.2 bits (139), Expect = 7e-08
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +1

Query: 424 KVWLYVYDLTNGMAATFSPMLLGRQIEALYHTXVVVGGVEY 546
           K+ L++YDL+ G+A T SPMLLG+ IEA+YHT VVV G EY
Sbjct: 25  KISLHIYDLSQGIAKTVSPMLLGQTIEAVYHTGVVVAGTEY 65

>gb|AAG16855.1|AC069145_4 unknown protein [Oryza sativa] gi|31432629|gb|AAP54237.1| unknown
           protein [Oryza sativa (japonica cultivar-group)]
          Length = 366

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 33/47 (70%)
 Frame = +1

Query: 406 MSEDGEKVWLYVYDLTNGMAATFSPMLLGRQIEALYHTXVVVGGVEY 546
           M++D   V L++YDL+ GMA   S  +LG+ IEA++HT VVV G EY
Sbjct: 76  MADDDYPVKLHIYDLSQGMARQLSTTILGKAIEAIWHTGVVVYGKEY 122

>ref|NP_187365.1| expressed protein [Arabidopsis thaliana]
           gi|6642656|gb|AAF20237.1|AC012395_24 unknown protein
           [Arabidopsis thaliana] gi|17529196|gb|AAL38824.1|
           unknown protein [Arabidopsis thaliana]
           gi|23296881|gb|AAN13194.1| unknown protein [Arabidopsis
           thaliana]
          Length = 265

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 24/47 (51%), Positives = 32/47 (68%)
 Frame = +1

Query: 406 MSEDGEKVWLYVYDLTNGMAATFSPMLLGRQIEALYHTXVVVGGVEY 546
           M+E+  KV L VYDL+ G+A   S  LLG+ IE ++HT +VV G EY
Sbjct: 1   MAEEAHKVTLNVYDLSQGLARQLSQSLLGKVIEGVWHTGIVVYGNEY 47

>gb|AAH45987.1| Similar to DNA segment, Chr 15, Wayne State University 75,
           expressed [Danio rerio]
          Length = 167

 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = +1

Query: 427 VWLYVYDLTNGMAATFSPMLLGRQIEALYHTXVVVGGVEY 546
           V LYVYDL+ G+A   SPM+LG+ +E ++HT +V  G E+
Sbjct: 9   VQLYVYDLSKGLARQLSPMMLGKTVEGIWHTGIVAYGEEF 48

>gb|AAH59442.1| Unknown (protein for MGC:73066) [Danio rerio]
          Length = 169

 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 18/40 (45%), Positives = 31/40 (77%)
 Frame = +1

Query: 427 VWLYVYDLTNGMAATFSPMLLGRQIEALYHTXVVVGGVEY 546
           V L++YDL+ GMA   SP++LG+Q++ ++HT +V+ G E+
Sbjct: 10  VQLFIYDLSRGMARQLSPIMLGKQLDGIWHTSIVIYGEEF 49



EST assemble image


clone accession position
1 HC019d05_r AV633316 1 471
2 MX247f01_r BP091969 2 491
3 MX038h03_r BP087608 12 379
4 MX257b08_r BP092643 12 345
5 MX243h02_r BP091756 14 363
6 LC099a04_r AV625860 32 462
7 MXL023h10_r BP094490 206 553




Chlamydomonas reinhardtii
Kazusa DNA Research Institute