KCC001857A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001857A_C01 KCC001857A_c01
agaggGACAACTCTAAAGCTCACGCTTCGCATAAGACTAAGCCCCTAAGTGCATTCTGTT
CTTGCCGCTGAAGTCGACGATTGGCTCCATAACGGTCGCCAACTTTCCTGCCCCGCGCTG
TCGCTCCTTCTGCGCCCCGCGCGCTGTGCTCCTCGCGGCTTGAACGCACCTCAAGCGGGC
TCGGCGAATTCTCTCTGGGCTACTCCCTGCTTGGAGTTCTATCTCGCTGCTTTGCGAGCT
CGCATTTGGCGGACTGCCGGTGTCTCTGCCCGGCTGACAAGGACAGGCGTCGCTAACGAG
TTGCGGTGCTTTGCTGTCTCGCACTAGCTCGCTATCCATGGCCACGAAGGCAATCGAGCT
GCCGACCGCGGCCACCTCTGAAAAGGCCTCGGGGGCCGGCGGCGCCGCGGCCGTCTTTTT
CATCCCCAAGAGCGTCATCACCGAGCTCTACACGAGTGGCATCAGCGTCGGGACGGGCAA
CACCGTCACCAACCCGCTCGATGTGATCAAGGTGCGGCTGCAGCTTGCTCGCAACCAGCT
GGCGGCTGGAGTCAAGCCACCAGGCATGATCGCCACGGGCATCAACGTGGTCCGCACCGA
GGGCGTCGGGGCCCTGTGGAGCGGCCTGGGGCCGTCCCTGGCGCGAGGCTTTTTCTTTGG
AGGCGCTCGCCTGGGCCTCTACACGCCCATCAAGACGGTCATCTGCGGCGAGAACTCAAA
ACCCAGCCTGGAGATGAAGGTGCTGTCTGGTTCGCTGTCTGGCGGCTTGGCGGCGGCGGT
CACCTCGCCCATTGAGCTGATCAAGACGCGGCTGCAGGCGGCGGGCCGCGACCCCACCGT
GCCCAAGACCTCGGTGGGCGTCATCCGAGCCGTCGTGGCGGCGGACGGCGTGGCGGGGCT
GTGGAAGGGAGCCATGCCCGGACTGATCCGCTCGGCCATCCTGACGGCGGCGCAGTGCGC
CACGTACGACGAGGTCAAGCGCACCGTGACCGCCACCACGGGCTGGACGGACGGCGTGGA
GCTGCACCTGACCAGCAGCATGATTGCCGGCCTGGTCACCACCACCATCACCAACCCCAT
TGACGTGATCAAGACGCGCATGTTTGTGGGCGGCAAGTCGTACAGCGGGCCCATGGCCTG
CGCCGCGCACGTGCTCAAGAGCGACGGCCTGATCGGGTTTATGAAGGGCTGGTCCGCTTC
GTACGCACGCCTGGGGCCGCACACCGTCATCATGTTCCTCACCGCGGAGCGACTGCGCAA
GTACGCCGGCCTGCAGAGCCTCTAGAACCTCCCAAGTAAGGCAGGAGGCAGGGCCTCTAG
CTAGAGCATTTGGAGCCTCTAGAACAGAGGCCCTGACTCTAGGCAGGGCAGCAGGATGCG
TGAGAGCGTGTGTGCGCATGCGTGCTTGTGTGCATGTGTGAGTATTTGTGAATATGTGTG
CGTGTCAGTGGTTGAGCGGGGCGAGCGGCGGGGGCTTGCGAGGTTTAGAAGGAAGATGGT
GGTAACCGGCGGGTGCCGGCTGCTGCTGACGCCGCCGGTGCCGAGAGACCAAACGTTTGC
GGGAATGGGTAGCAGCAGCAGCAGCAGCAGCAGCAACTTGCGTGACGTAACCTCAAGCAT
TTGAGCGGCACGCATGGTTGCATGAGTAGTAGATTTGGACGCAGTGACAAGTGACACGCC
TTGCGACGCGCGCAAACACGGCGCACGGATACAGCGAGTGTGGGCAATGATGATTGTGTT
GCGTGCGTGTCCTTACGTTGTGCTGGGACTTTGACAAGACATGCTGCGGTCGCGTTGCCT
GCCTGATGGAATGCGAAGCACTGCGGGAGAGTTTTGGCCGGCAGGGTTTTGGGCACTGGA
TTGGGCACTGGATAGATATCGCTGGATAGGGAGGAGGCCCGGAGCAGCAGGTCGGGTCCA
AGATTTTGCCTTGAGGTTTGTGCGTGTGTGTGCAGGCCTATCTCCCCAATGGATTCCCGT
GCCCTGCGTGTTGCATGCACATACGCACGTCATGCTAAGCAAGGCGGngggcggacttga
tagc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001857A_C01 KCC001857A_c01
         (2044 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_190979.1| uncoupling protein (ucp/PUMP) [Arabidopsis thal...   197  5e-49
dbj|BAC06495.1| mitochondrial uncoupling protein [Helicodiceros ...   197  6e-49
dbj|BAA92172.1| SfUCPa [Symplocarpus foetidus]                        196  1e-48
pir||T52024 uncoupling protein [imported] - Arabidopsis thaliana...   194  5e-48
dbj|BAB16385.1| uncoupling protein [Triticum aestivum]                192  2e-47

>ref|NP_190979.1| uncoupling protein (ucp/PUMP) [Arabidopsis thaliana]
            gi|11277068|pir||T47570 uncoupling protein [imported] -
            Arabidopsis thaliana gi|3451392|emb|CAA04638.1|
            mitochondrial uncoupling protein [Arabidopsis thaliana]
            gi|4127446|emb|CAA77109.1| uncoupling protein
            [Arabidopsis thaliana] gi|6822057|emb|CAB70985.1|
            uncoupling protein (ucp/PUMP) [Arabidopsis thaliana]
            gi|7673023|gb|AAF66705.1|AF146226_1 putative uncoupling
            protein PUMP2 [Arabidopsis thaliana]
            gi|15810467|gb|AAL07121.1| putative uncoupling protein
            ucp/PUMP [Arabidopsis thaliana]
            gi|20259563|gb|AAM14124.1| putative uncoupling protein
            [Arabidopsis thaliana]
          Length = 306

 Score =  197 bits (502), Expect = 5e-49
 Identities = 110/279 (39%), Positives = 158/279 (56%), Gaps = 9/279 (3%)
 Frame = +2

Query: 455  SGISVGTGNTVTNPLDVIKVRLQLARNQLAAGVKPP---GMIATGINVVRTEGVGALWSG 625
            S  +   G   T PLD  KVRLQL ++ LA  V  P   G++ T   + R EG+ +LW G
Sbjct: 18   SAFAACVGEVCTIPLDTAKVRLQLQKSALAGDVTLPKYRGLLGTVGTIAREEGLRSLWKG 77

Query: 626  LGPSLARGFFFGGARLGLYTPIKTVICGEN--SKPSLEMKVLSGSLSGGLAAAVTSPIEL 799
            + P L R   FGG R+G+Y P+K +  G++      L  K+L+G  +G L   V +P +L
Sbjct: 78   VVPGLHRQCLFGGLRIGMYEPVKNLYVGKDFVGDVPLSKKILAGLTTGALGIMVANPTDL 137

Query: 800  IKTRLQAAGRDPT-VPKTSVGVIRA---VVAADGVAGLWKGAMPGLIRSAILTAAQCATY 967
            +K RLQA G+     P+   G + A   +V  +GV  LW G  P + R+AI+ AA+ A+Y
Sbjct: 138  VKVRLQAEGKLAAGAPRRYSGALNAYSTIVRQEGVRALWTGLGPNVARNAIINAAELASY 197

Query: 968  DEVKRTVTATTGWTDGVELHLTSSMIAGLVTTTITNPIDVIKTRMFVGGKSYSGPMACAA 1147
            D+VK T+    G+TD V  H+ S + AG     I +P+DV+K+RM     +Y G + C  
Sbjct: 198  DQVKETILKIPGFTDNVVTHILSGLGAGFFAVCIGSPVDVVKSRMMGDSGAYKGTIDCFV 257

Query: 1148 HVLKSDGLIGFMKGWSASYARLGPHTVIMFLTAERLRKY 1264
              LKSDG + F KG+  ++ RLG   VIMFLT E+ +KY
Sbjct: 258  KTLKSDGPMAFYKGFIPNFGRLGSWNVIMFLTLEQAKKY 296

>dbj|BAC06495.1| mitochondrial uncoupling protein [Helicodiceros muscivorus]
          Length = 304

 Score =  197 bits (501), Expect = 6e-49
 Identities = 108/268 (40%), Positives = 159/268 (59%), Gaps = 10/268 (3%)
 Frame = +2

Query: 488  TNPLDVIKVRLQLARNQLAA-GVKPP---GMIATGINVVRTEGVGALWSGLGPSLARGFF 655
            T PLD  KVRLQL +  +A  GV  P   GM+ T   + R EG+ ALW G+ P L R   
Sbjct: 31   TIPLDTAKVRLQLQKKSVAGDGVSLPKYRGMLGTVATIAREEGLSALWKGIVPGLHRQCL 90

Query: 656  FGGARLGLYTPIKTVICGEN--SKPSLEMKVLSGSLSGGLAAAVTSPIELIKTRLQAAGR 829
            FGG R+GLY P+K+   GE       L  K+L+G  +G LA  V +P +L+K RLQA G+
Sbjct: 91   FGGLRIGLYEPVKSFYVGEGFVGDVPLSKKILAGLTTGALAITVANPTDLVKVRLQAEGK 150

Query: 830  -DPTVPKTSVGVIRA---VVAADGVAGLWKGAMPGLIRSAILTAAQCATYDEVKRTVTAT 997
              P +P+   G + A   +V  +G+  LW G  P + R+AI+ AA+ A+YD+VK+T+   
Sbjct: 151  LSPGIPRRYSGALNAYSTIVKQEGLGALWTGLGPNIARNAIINAAELASYDQVKQTILKI 210

Query: 998  TGWTDGVELHLTSSMIAGLVTTTITNPIDVIKTRMFVGGKSYSGPMACAAHVLKSDGLIG 1177
             G++D +  H+ + + AG V   I +P+DV+K+RM +G  +Y   + C     K+DG + 
Sbjct: 211  PGFSDNIFTHILAGLGAGFVAVCIGSPVDVVKSRM-MGDSTYKSTLDCFIKTFKNDGPLA 269

Query: 1178 FMKGWSASYARLGPHTVIMFLTAERLRK 1261
            F KG+  ++ RLG   VIMFLT E+++K
Sbjct: 270  FYKGFIPNFGRLGSWNVIMFLTLEQVKK 297

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 55/190 (28%), Positives = 98/190 (50%), Gaps = 3/190 (1%)
 Frame = +2

Query: 422 IPKSVITELYTSGISVGTGNTVTNPLDVIKVRLQLARNQLAAGV--KPPGMIATGINVVR 595
           + K ++  L T  +++    TV NP D++KVRLQ A  +L+ G+  +  G +     +V+
Sbjct: 117 LSKKILAGLTTGALAI----TVANPTDLVKVRLQ-AEGKLSPGIPRRYSGALNAYSTIVK 171

Query: 596 TEGVGALWSGLGPSLARGFFFGGARLGLYTPIK-TVICGENSKPSLEMKVLSGSLSGGLA 772
            EG+GALW+GLGP++AR      A L  Y  +K T++       ++   +L+G  +G +A
Sbjct: 172 QEGLGALWTGLGPNIARNAIINAAELASYDQVKQTILKIPGFSDNIFTHILAGLGAGFVA 231

Query: 773 AAVTSPIELIKTRLQAAGRDPTVPKTSVGVIRAVVAADGVAGLWKGAMPGLIRSAILTAA 952
             + SP++++K+R+     D T  K+++         DG    +KG +P   R       
Sbjct: 232 VCIGSPVDVVKSRMMG---DSTY-KSTLDCFIKTFKNDGPLAFYKGFIPNFGRLGSWNVI 287

Query: 953 QCATYDEVKR 982
              T ++VK+
Sbjct: 288 MFLTLEQVKK 297

>dbj|BAA92172.1| SfUCPa [Symplocarpus foetidus]
          Length = 303

 Score =  196 bits (499), Expect = 1e-48
 Identities = 107/269 (39%), Positives = 159/269 (58%), Gaps = 10/269 (3%)
 Frame = +2

Query: 488  TNPLDVIKVRLQLARNQLAAGV----KPPGMIATGINVVRTEGVGALWSGLGPSLARGFF 655
            T PLD  KVRLQL +  +   V    K  GM+ T   + R EG+ ALW G+ P L R   
Sbjct: 29   TIPLDTAKVRLQLQKKAVTGDVVALPKYRGMLGTVATIAREEGLSALWKGIVPGLHRQCL 88

Query: 656  FGGARLGLYTPIKTVICGEN--SKPSLEMKVLSGSLSGGLAAAVTSPIELIKTRLQAAGR 829
            FGG R+GLY P+K+   G+N      L  K+L+G  +G LA  V +P +L+K RLQ+ G+
Sbjct: 89   FGGLRIGLYEPVKSFYVGDNFVGDIPLSKKILAGLTTGALAIIVANPTDLVKVRLQSEGK 148

Query: 830  -DPTVPKTSVGVIRA---VVAADGVAGLWKGAMPGLIRSAILTAAQCATYDEVKRTVTAT 997
              P VP+   G + A   +V  +G+  LW G  P + R+AI+ AA+ A+YD+VK+T+   
Sbjct: 149  LPPGVPRRYSGALNAYSTIVKKEGLGALWTGLGPNIARNAIINAAELASYDQVKQTILKL 208

Query: 998  TGWTDGVELHLTSSMIAGLVTTTITNPIDVIKTRMFVGGKSYSGPMACAAHVLKSDGLIG 1177
             G++D +  H+ + + AG     I +P+DV+K+RM +G  +Y     C    LK+DGL+ 
Sbjct: 209  PGFSDNIFTHILAGLGAGFFAVCIGSPVDVMKSRM-MGDSAYKSTFDCFIKTLKNDGLLA 267

Query: 1178 FMKGWSASYARLGPHTVIMFLTAERLRKY 1264
            F KG+  ++ RLG   VIMFLT E+++K+
Sbjct: 268  FYKGFIPNFGRLGSWNVIMFLTLEQVKKF 296

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 52/190 (27%), Positives = 95/190 (49%), Gaps = 3/190 (1%)
 Frame = +2

Query: 422 IPKSVITELYTSGISVGTGNTVTNPLDVIKVRLQLARNQLAAGV--KPPGMIATGINVVR 595
           + K ++  L T  +++     V NP D++KVRLQ +  +L  GV  +  G +     +V+
Sbjct: 115 LSKKILAGLTTGALAI----IVANPTDLVKVRLQ-SEGKLPPGVPRRYSGALNAYSTIVK 169

Query: 596 TEGVGALWSGLGPSLARGFFFGGARLGLYTPIK-TVICGENSKPSLEMKVLSGSLSGGLA 772
            EG+GALW+GLGP++AR      A L  Y  +K T++       ++   +L+G  +G  A
Sbjct: 170 KEGLGALWTGLGPNIARNAIINAAELASYDQVKQTILKLPGFSDNIFTHILAGLGAGFFA 229

Query: 773 AAVTSPIELIKTRLQAAGRDPTVPKTSVGVIRAVVAADGVAGLWKGAMPGLIRSAILTAA 952
             + SP++++K+R+       +  K++       +  DG+   +KG +P   R       
Sbjct: 230 VCIGSPVDVMKSRMMG----DSAYKSTFDCFIKTLKNDGLLAFYKGFIPNFGRLGSWNVI 285

Query: 953 QCATYDEVKR 982
              T ++VK+
Sbjct: 286 MFLTLEQVKK 295

>pir||T52024 uncoupling protein [imported] - Arabidopsis thaliana
            gi|3115108|emb|CAA11757.1| plant uncoupling mitochondrial
            protein [Arabidopsis thaliana]
          Length = 306

 Score =  194 bits (493), Expect = 5e-48
 Identities = 109/279 (39%), Positives = 157/279 (56%), Gaps = 9/279 (3%)
 Frame = +2

Query: 455  SGISVGTGNTVTNPLDVIKVRLQLARNQLAAGVKPP---GMIATGINVVRTEGVGALWSG 625
            S  +   G   T PLD  KVRLQL ++ LA  V  P   G++ T   + R EG+ +LW G
Sbjct: 18   SAFAACVGEVCTIPLDTAKVRLQLQKSALAGDVTLPKYRGLLGTVGTIAREEGLRSLWKG 77

Query: 626  LGPSLARGFFFGGARLGLYTPIKTVICGEN--SKPSLEMKVLSGSLSGGLAAAVTSPIEL 799
            + P L R   FGG R+G+Y P+K +  G++      L  K+L+G  +G L   V +P +L
Sbjct: 78   VVPGLHRQCLFGGLRIGMYEPVKNLYVGKDFVGDVPLSKKILAGLTTGALGIMVANPTDL 137

Query: 800  IKTRLQAAGRDPT-VPKTSVGVIRA---VVAADGVAGLWKGAMPGLIRSAILTAAQCATY 967
            +K RLQA G+     P+   G + A   +V  +GV  LW    P + R+AI+ AA+ A+Y
Sbjct: 138  VKVRLQAEGKLAAGAPRRYSGALNAYSTIVRQEGVRALWTVLGPNVARNAIINAAELASY 197

Query: 968  DEVKRTVTATTGWTDGVELHLTSSMIAGLVTTTITNPIDVIKTRMFVGGKSYSGPMACAA 1147
            D+VK T+    G+TD V  H+ S + AG     I +P+DV+K+RM     +Y G + C  
Sbjct: 198  DQVKETILKIPGFTDNVVTHILSGLGAGFFAVCIGSPVDVVKSRMMGDSGAYKGTIDCFV 257

Query: 1148 HVLKSDGLIGFMKGWSASYARLGPHTVIMFLTAERLRKY 1264
              LKSDG + F KG+  ++ RLG   VIMFLT E+ +KY
Sbjct: 258  KTLKSDGPMAFYKGFIPNFGRLGSWNVIMFLTLEQAKKY 296

>dbj|BAB16385.1| uncoupling protein [Triticum aestivum]
          Length = 286

 Score =  192 bits (488), Expect = 2e-47
 Identities = 106/276 (38%), Positives = 159/276 (57%), Gaps = 5/276 (1%)
 Frame = +2

Query: 452  TSGISVGTGNTVTNPLDVIKVRLQLARNQLAAGVKPPGMIATGINVVRTEGVGALWSGLG 631
            +S I+       T PLD  KVRLQL +   A      GM+ T +++ R EGV ALW G+ 
Sbjct: 13   SSAIASCFAEVCTIPLDTAKVRLQLQKKTAAGPAATVGMLGTMMSIAREEGVSALWKGII 72

Query: 632  PSLARGFFFGGARLGLYTPIKT--VICGENSKPSLEMKVLSGSLSGGLAAAVTSPIELIK 805
            P   R   +GG R+GLY P+K   V  G+    +L  K+L+   +G +A AV +P +L+K
Sbjct: 73   PGFHRQCLYGGLRVGLYEPVKALFVFVGD---ATLMNKILAALTTGVIAIAVANPTDLVK 129

Query: 806  TRLQAAGRDPTVPKTSVGVIRA---VVAADGVAGLWKGAMPGLIRSAILTAAQCATYDEV 976
             RLQA G+   V +   G + A   +V  +G+  LW G  P + R+A++ AA+ A+YD+ 
Sbjct: 130  VRLQADGKSTAVKRHYSGALNAYATIVRQEGIGALWTGLGPNMARNALINAAELASYDQF 189

Query: 977  KRTVTATTGWTDGVELHLTSSMIAGLVTTTITNPIDVIKTRMFVGGKSYSGPMACAAHVL 1156
            K+      G+TD V  HL + + AG+    I +P+DV+K+RM +G  +Y     C A  L
Sbjct: 190  KQMFLGLPGFTDNVYTHLLAGLGAGIFAVCIGSPVDVVKSRM-MGDSTYRSTFDCFAKTL 248

Query: 1157 KSDGLIGFMKGWSASYARLGPHTVIMFLTAERLRKY 1264
            K+DGL  F KG+ A++ R+G   VIMFLT E++R++
Sbjct: 249  KNDGLAAFYKGFIANFCRVGSWNVIMFLTLEQVRRF 284



EST assemble image


clone accession position
1 MXL066f08_r BP096895 1 498
2 LCL096a11_r AV631551 5 256
3 LCL029e10_r AV627618 6 555
4 HCL040a12_r AV641778 8 495
5 LCL083e01_r AV630734 8 473
6 HC070f07_r AV637248 8 448
7 HC084g05_r AV638310 8 451
8 LCL019c07_r AV626980 13 509
9 MXL033b11_r BP094952 13 443
10 HC077g11_r AV637811 18 439
11 MXL015b12_r BP093890 19 340
12 HCL039d01_r AV641723 19 475
13 MXL036g05_r BP095153 19 511
14 HCL046b06_r AV642132 19 342
15 HC022b06_r AV633550 21 491
16 MX241a02_r BP091556 22 518
17 HC098g06_r AV639392 23 440
18 LCL084d08_r AV630795 24 495
19 HCL019g05_r AV640646 26 287
20 HCL087b03_r AV644364 35 414
21 HCL021h08_r AV640759 35 527
22 LCL068d07_r AV629889 42 534
23 LCL011b10_r AV626554 52 233
24 MXL070g09_r BP097142 61 415
25 HC099a06_r AV639413 68 460
26 LCL021g04_r AV627139 266 544
27 LCL055g04_r AV629274 284 804
28 HCL029e05_r AV641192 318 726
29 HC081b08_r AV638046 480 903
30 HCL068f01_r AV643378 673 1168
31 LC100g08_r AV625991 719 930
32 HC025a03_r AV633767 862 1295
33 HC012f03_r AV632789 1008 1384
34 MX233f11_r BP091094 1209 1495
35 HC046c08_r AV635433 1237 1470
36 HC011h06_r AV632729 1246 1709
37 HC011g01_r AV632713 1250 1811
38 MX259e03_r BP092811 1356 1857
39 MX250e05_r BP092158 1356 1825
40 HC033g10_r AV634470 1468 2008
41 MXL019c11_r BP094187 1512 2047




Chlamydomonas reinhardtii
Kazusa DNA Research Institute