KCC001854A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001854A_C01 KCC001854A_c01
ATACAGAGGATTTACCGCATATGTTTGCTTTATCCAAACATCAATAGCCAAACAACCACT
GAACCAGTGCAAGTCTGATGGCGTCAAGCGATGCAGCACCCAAATCGATTCAGGACGTTC
GCGCTCTTTTATACCGAAAGTTCCGGGTAACACTAACTTCGGGGAGAGTGCTGGAGGGCG
ACTTCTCCTGCCTGGACAAGCAGGGCAACATCATCCTCAGCAACACGCTTGAGCAGCTCA
CCACCGCGACGGGCAAGAAGGAGGAGCGGCACATGGGGCTTGTGCTTGTGCCGGTGCAGC
AGCAACAGAAGGTGGAGCTACAGGCGAGCCTTGATGAGGAGATGTCCATGTTGAAGCTGG
TGGAGGGCTACACGGCGGCGCCCACACCCGTGGCATGAGGGGGCAGCTGTGCTGACTGAG
GCATGACGCGTGCTGCAGCTGCGATGGGCAGCGGAATGGTGATGACATGAATGAGTGTCC
CGTGTCGTCCGGTTGCGCCAAACGCTCTTTGCATGCGCCTTGACATACATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001854A_C01 KCC001854A_c01
         (531 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_680719.1| expressed protein [Arabidopsis thaliana]              67  1e-10
gb|AAH33861.1| MGC14151 protein [Homo sapiens]                         48  7e-05
ref|NP_115732.1| hypothetical protein MGC14151 [Homo sapiens] gi...    48  7e-05
ref|XP_126187.1| RIKEN cDNA 1500034E06 [Mus musculus] gi|1285867...    47  2e-04
ref|XP_213347.1| similar to hypothetical protein MGC14151 [Rattu...    47  2e-04

>ref|NP_680719.1| expressed protein [Arabidopsis thaliana]
          Length = 112

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
 Frame = +3

Query: 69  ASLMASSDAAPKSIQDVRALLYRKFRVTLTSGRVLEGDFSCLDKQGNIILSNTLEQLT-- 242
           AS    SD  P  I  +R LL+R+  V +  GR   G+F C+DKQGNIIL +T+E  +  
Sbjct: 13  ASTSEGSDFDP--ISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIR 70

Query: 243 -TATGKKEERHMGLVLVPVQQQQKVELQASLDEEMSMLKLVE 365
            ++    E+R +G++L+P   +    +  S+DE++S+++L E
Sbjct: 71  RSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQLKE 112

>gb|AAH33861.1| MGC14151 protein [Homo sapiens]
          Length = 173

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 28/79 (35%), Positives = 43/79 (53%), Gaps = 2/79 (2%)
 Frame = +3

Query: 93  AAPKSIQDVRALLYRKFRVTLTSGRVLEGDFSCLDKQGNIILSNTLEQL--TTATGKKEE 266
           AA ++ Q + ALL +  R+ +T GR L G F C D+  N+IL +  E L  + +    E 
Sbjct: 85  AAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEP 144

Query: 267 RHMGLVLVPVQQQQKVELQ 323
           R +GL +VP      +E+Q
Sbjct: 145 RVLGLAMVPGHHIVSIEVQ 163

>ref|NP_115732.1| hypothetical protein MGC14151 [Homo sapiens]
           gi|13623585|gb|AAH06407.1| Hypothetical protein MGC14151
           [Homo sapiens] gi|30353999|gb|AAH51846.1| Hypothetical
           protein MGC14151 [Homo sapiens]
           gi|33329087|gb|AAQ09944.1| phosphonoformate
           immuno-associated protein 2 [Homo sapiens]
          Length = 125

 Score = 48.1 bits (113), Expect = 7e-05
 Identities = 28/79 (35%), Positives = 43/79 (53%), Gaps = 2/79 (2%)
 Frame = +3

Query: 93  AAPKSIQDVRALLYRKFRVTLTSGRVLEGDFSCLDKQGNIILSNTLEQL--TTATGKKEE 266
           AA ++ Q + ALL +  R+ +T GR L G F C D+  N+IL +  E L  + +    E 
Sbjct: 37  AAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEP 96

Query: 267 RHMGLVLVPVQQQQKVELQ 323
           R +GL +VP      +E+Q
Sbjct: 97  RVLGLAMVPGHHIVSIEVQ 115

>ref|XP_126187.1| RIKEN cDNA 1500034E06 [Mus musculus] gi|12858676|dbj|BAB31406.1|
           unnamed protein product [Mus musculus]
          Length = 125

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +3

Query: 96  APKSIQDVRALLYRKFRVTLTSGRVLEGDFSCLDKQGNIILSNTLEQL--TTATGKKEER 269
           A ++ Q + ALL +  R+ +T GR L G F C D+  N+IL +  E L  + +    E R
Sbjct: 38  ATRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPR 97

Query: 270 HMGLVLVPVQQQQKVELQ 323
            +GL +VP      +E+Q
Sbjct: 98  VLGLAMVPGHHIVSIEVQ 115

>ref|XP_213347.1| similar to hypothetical protein MGC14151 [Rattus norvegicus]
          Length = 125

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +3

Query: 96  APKSIQDVRALLYRKFRVTLTSGRVLEGDFSCLDKQGNIILSNTLEQL--TTATGKKEER 269
           A ++ Q + ALL +  R+ +T GR L G F C D+  N+IL +  E L  + +    E R
Sbjct: 38  AARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPR 97

Query: 270 HMGLVLVPVQQQQKVELQ 323
            +GL +VP      +E+Q
Sbjct: 98  VLGLAMVPGHHIVSIEVQ 115



EST assemble image


clone accession position
1 MXL067h07_r BP096966 1 297
2 LC015d09_r AV619949 1 519
3 LC014f02_r AV619890 1 533
4 LC005g11_r AV619261 1 454
5 HC011b06_r AV632671 31 488




Chlamydomonas reinhardtii
Kazusa DNA Research Institute