KCC001853A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001853A_C01 KCC001853A_c01
atacgCTCATAAGCTCACACAAATAGAAATGGTCCTACTCCTAGTCACGCACACGATTGA
AGTGCCCTCCTCGCGAGTGCCGCTATCCGCTATCATCCTGGTCGATGCCATCAAGCGCAA
ACAGCTGCCTCCGAATCTAAAATGCCGGCTGGTAATCCCGAGCTCGGGGCACCACTCTTG
CTCAATATGGGACGCTAGCTCGGTGGAGGAGCTCCAAGCTTGGATTGACATAAACCTCCT
GGATGGCACAGCTAGCATCGCGGAGATTCCCGAGGAGTTCACGTATGGCCTTTCGCTGGA
GCTGACTACGGCGCGTGCTGCTGACAAGGTCGCCACCACCAGCAAATCCACGCTGGAGCG
AATCAACACCACCGGCGCGCGCGTTATGGAGAGCATGTCGGAGAAGCTGGACGCGCGCAC
CAACCTGATCACGGCCACCCGTGAGACCGCCTCCGCCGCCGCCGCTAAGGTGAAGCAGGC
CACCAACAGCGCCATGGAGAACGAGAGCGTGCAGCGGGGGCTGCAGAGCCTCAGCACCTC
GCTGCAGAGCGCAGGCACCAGCATGAACCGCGCCTTCACCTGGGTGGGCAGCAAGGTGAA
GGAGTCCTTTGGCGCCGAGGCGGGCGCGGGCTACACGGGCGGTGGCGGCGTGGGCGGCGC
GCAGTCCTACAGCGGCTTCAGCTCCGAGCCGCCCAGCTATGAGGCCGCGGCTTACGCCTC
CGCGCCCGCCGCGGCTGCGGGTCTGGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001853A_C01 KCC001853A_c01
         (749 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_310724.1| ENSANGP00000010257 [Anopheles gambiae] gi|21294...    58  1e-07
dbj|BAC87637.1| unnamed protein product [Homo sapiens]                 54  3e-06
ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|2838049...    53  4e-06
ref|NP_507521.1| putative protein (5S487) [Caenorhabditis elegan...    52  8e-06
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    52  8e-06

>ref|XP_310724.1| ENSANGP00000010257 [Anopheles gambiae] gi|21294553|gb|EAA06698.1|
           ENSANGP00000010257 [Anopheles gambiae str. PEST]
          Length = 139

 Score = 58.2 bits (139), Expect = 1e-07
 Identities = 54/141 (38%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
 Frame = +3

Query: 324 TRSPPPANPRWS--ESTPPARALWRACRRSWTRAPT*SRPPVRPPPPPPLR*SRPPTAP- 494
           +R P PANPR     ++ P R+  R  R + T+ P   RPP R PPPPP     PPT P 
Sbjct: 6   SRRPSPANPRSGGPAASCPRRSASR--RATSTKRPRSGRPPARSPPPPP-----PPTTPP 58

Query: 495 -WRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPRRARATRAVAAWAARSPT 671
             R RA   G RA+ PR   +A   TAP+ G +   R P    R + T      A  S T
Sbjct: 59  SGRRRAGRAG-RAAPPRSTPRAA--TAPTAGSS---RPPCPRPRTKMTS-----ARSSAT 107

Query: 672 AASAPSRPAMRP----RLTPP 722
           A + P  P  RP     L PP
Sbjct: 108 ARTLPPAPTCRPPGPSTLLPP 128

>dbj|BAC87637.1| unnamed protein product [Homo sapiens]
          Length = 286

 Score = 53.5 bits (127), Expect = 3e-06
 Identities = 54/157 (34%), Positives = 66/157 (41%), Gaps = 20/157 (12%)
 Frame = +3

Query: 324 TRSPPPANPRWSESTPPARALWRAC-RRSWTRAPT*SRPPVRPPPPPPLR*SRPPTAPWR 500
           TR+PP A+PR    TPP  +  R   R S TR PT   PP R PP  P   + P  +P R
Sbjct: 46  TRTPPRASPR---RTPPRASPRRTPPRASLTRPPT-RAPPTRMPPTAPPTRTPPTASPAR 101

Query: 501 TRACSGGCRASAPRCRAQAPA*TAP-----------SPGWAAR*RSPLAPRRARATRAVA 647
           T       R       A+ P   +P           +P  A+  R+P  PR +       
Sbjct: 102 TPPTESPARTPPTASPARTPPRASPTRTPPRASPRRTPSTASPTRTP--PRASPRRTPPR 159

Query: 648 AWAARSPTAASAPSR--PAMRPRLTPPR------PPR 734
           A   R+P  AS P R  P   PR TPPR      PPR
Sbjct: 160 ASPTRTPPRAS-PKRTPPRASPRRTPPRASPTRAPPR 195

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 51/149 (34%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
 Frame = +3

Query: 324 TRSPPPANPRWSESTP-PARALWRAC-RRSWTRAPT*SRPPVRPPPPPPLR*SRPPTAPW 497
           TR+PP A+PR + ST  P R   RA  RR+  RA      P R PP    + + P  +P 
Sbjct: 127 TRTPPRASPRRTPSTASPTRTPPRASPRRTPPRAS-----PTRTPPRASPKRTPPRASPR 181

Query: 498 RTRACSGGCRASAPRCRAQAPA*TAP--SPGWAAR*RSP------LAPRRARATRAVAAW 653
           RT   +   RA       + P   +P  +P  A+  R+P        P RA  TR     
Sbjct: 182 RTPPRASPTRAPPRASPKRTPPTASPTRTPPRASPTRTPPTESPARTPPRASPTRTPPTE 241

Query: 654 A-ARSPTAASAPSRPAMRPRLTPPR-PPR 734
           + AR+P+ AS    P   PR +P R PPR
Sbjct: 242 SPARTPSRASTRRTP---PRASPTRTPPR 267

 Score = 40.8 bits (94), Expect = 0.023
 Identities = 38/139 (27%), Positives = 56/139 (39%), Gaps = 6/139 (4%)
 Frame = +3

Query: 324 TRSPPPANPRWSES------TPPARALWRACRRSWTRAPT*SRPPVRPPPPPPLR*SRPP 485
           TR+PP A+PR +        TPP  +  R   R+  R       P R PP    + + P 
Sbjct: 145 TRTPPRASPRRTPPRASPTRTPPRASPKRTPPRASPRRTPPRASPTRAPPRASPKRTPPT 204

Query: 486 TAPWRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPRRARATRAVAAWAARS 665
            +P RT   +   R       A+ P   +P+       R+P     AR T + A+     
Sbjct: 205 ASPTRTPPRASPTRTPPTESPARTPPRASPT-------RTPPTESPAR-TPSRASTRRTP 256

Query: 666 PTAASAPSRPAMRPRLTPP 722
           P A+   + P   P+ TPP
Sbjct: 257 PRASPTRTPPRASPKRTPP 275

>ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|28380492|gb|AAF49349.4|
           CG13731-PA [Drosophila melanogaster]
          Length = 926

 Score = 53.1 bits (126), Expect = 4e-06
 Identities = 46/142 (32%), Positives = 54/142 (37%)
 Frame = +3

Query: 315 VLLTRSPPPANPRWSESTPPARALWRACRRSWTRAPT*SRPPVRPPPPPPLR*SRPPTAP 494
           V  TR PPP  P    + PP   L     R+    P  +RPP RPP PPP R   PPT  
Sbjct: 525 VRTTRPPPP--PTRPPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTPPPTRPPPPPT-- 580

Query: 495 WRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPRRARATRAVAAWAARSPTA 674
                     RAS P     AP    P+         PL P   R T         +P  
Sbjct: 581 ----------RASTP-----APTYLPPT-------NKPLPPVTVRTT------VRTTPRP 612

Query: 675 ASAPSRPAMRPRLTPPRPPRLR 740
              P++P  RP  T   PP +R
Sbjct: 613 TLPPTKPPTRPPTTYLPPPSVR 634

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 49/164 (29%), Positives = 60/164 (35%), Gaps = 28/164 (17%)
 Frame = +3

Query: 333 PPPANPRWSESTPPARALWRACRRSWTRAPT*SRPPVR----------PPPPPPLR*--- 473
           PPP +PR   + PP R      R   TR P    PP            PPPPPP R    
Sbjct: 272 PPPPSPR---TPPPTRP---PTRPPTTRPPATYLPPTNKPLPPVTTRLPPPPPPPRTPPP 325

Query: 474 SRPPTAPWRTRACSGGC-------------RASAPRCRAQAPA*TA--PSPGWAAR*RSP 608
           +RPPT P  TR  +                R + P  R   P   A  P+P +      P
Sbjct: 326 TRPPTKPPTTRPPATYLPPTNKPPPPVTTRRPTPPPTRPPPPPTRASTPAPTYLPPTNKP 385

Query: 609 LAPRRARATRAVAAWAARSPTAASAPSRPAMRPRLTPPRPPRLR 740
           L P   R T         +P     P++P  RP  T   PP +R
Sbjct: 386 LPPVTVRTT------VRTTPRPTPPPTKPPTRPPTTYLPPPTVR 423

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 41/152 (26%), Positives = 53/152 (33%), Gaps = 15/152 (9%)
 Frame = +3

Query: 330 SPPPANPRWSESTPPARALWRACRRSWTRAPT*SRPPVRPP---------------PPPP 464
           +PPP  P    + PP   L     R+    P  +RPP +PP               PPP 
Sbjct: 402 TPPPTKP---PTRPPTTYLPPPTVRTTRPPPPPTRPPTKPPTTYLPPVTVRTTRATPPPT 458

Query: 465 LR*SRPPTAPWRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPRRARATRAV 644
              +RPPT P  TR                    T P+P +      PL P   R T   
Sbjct: 459 RPPTRPPTYPPTTRRL------------------TTPAPTYLPPTNKPLPPVTVRTT--- 497

Query: 645 AAWAARSPTAASAPSRPAMRPRLTPPRPPRLR 740
                 +P     P++P  RP  T   PP +R
Sbjct: 498 ---VRTTPRPTLPPTKPPTRPPTTYLPPPTVR 526

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
 Frame = +3

Query: 306  LRRVLLTRSPPPANPRWSESTPPARALWRACRRSWTRAPT*SRPPVRPP----------- 452
            +R  + T   P   P    + PP   L     R+    P  +RPP +PP           
Sbjct: 705  VRTTVRTTPRPTLPPTKPPTRPPTTYLPPPTVRTTRPPPPPTRPPTKPPTTYLPPVTVRT 764

Query: 453  ----PPPPLR*SRPPTAPWRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPR 620
                PPP    +RPPT P  TR                    T P+P +      PL P 
Sbjct: 765  TRATPPPTRPPTRPPTYPPTTRRL------------------TTPAPTYLPPTNKPLPPV 806

Query: 621  RARATRAVAAWAARSPTAASAPSRPAMRPRLTPPRPPRLR 740
              R T         +P     P+RP  +P  T   PP +R
Sbjct: 807  TVRTT------VRTTPRPTLPPTRPPTKPPTTYLPPPTVR 840

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
 Frame = +3

Query: 306  LRRVLLTRSPPPANPRWSESTPPARALWRACRRSWTRAPT*SRPPVRPP----------- 452
            +R  + T   P   P    + PP   L     R+    P  +RPP +PP           
Sbjct: 602  VRTTVRTTPRPTLPPTKPPTRPPTTYLPPPSVRTTRPPPPPTRPPTKPPTTYLPPVTVRT 661

Query: 453  ----PPPPLR*SRPPTAPWRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPR 620
                PPP    +RPPT P  TR                    T P+P +      PL P 
Sbjct: 662  TRATPPPTRPPTRPPTYPPTTRRL------------------TTPAPTYLPPTNKPLPPV 703

Query: 621  RARATRAVAAWAARSPTAASAPSRPAMRPRLTPPRPPRLR 740
              R T         +P     P++P  RP  T   PP +R
Sbjct: 704  TVRTT------VRTTPRPTLPPTKPPTRPPTTYLPPPTVR 737

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 46/148 (31%), Positives = 53/148 (35%), Gaps = 12/148 (8%)
 Frame = +3

Query: 324 TRSPPPANPRWSESTPPARALWRACRRSWTRAPT*SRP--PVR---PPPPPPLR*---SR 479
           T  PP   P    + PP R   R      T  P  ++P  PV    PPPPPP R    +R
Sbjct: 182 TTQPPTRPPTRPPTRPPTRPPTRPPTPPPTYLPPTNKPLPPVTTRLPPPPPPPRTPPPTR 241

Query: 480 PPTAPWRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPRRARATRAVAAWAA 659
           PPT P  TR  +       P      P  T   P        P +PR    TR       
Sbjct: 242 PPTRPPTTRPPA----TYLPPTNKPLPPVTTRLP------PPPPSPRTPPPTRPPTRPPT 291

Query: 660 RSPTAASAPSR----PAMRPRLTPPRPP 731
             P A   P      P +  RL PP PP
Sbjct: 292 TRPPATYLPPTNKPLPPVTTRLPPPPPP 319

 Score = 40.8 bits (94), Expect = 0.023
 Identities = 46/157 (29%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
 Frame = +3

Query: 315 VLLTRSPPPANPRWSESTPPARALWRACRRSWTRAPT*SRPPVRPP--PPPPLR*SRP-- 482
           V  TR PPP  P    + PP   L     R+    P  +RPP RPP  PP   R + P  
Sbjct: 422 VRTTRPPPP--PTRPPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTYPPTTRRLTTPAP 479

Query: 483 ----------PTAPWRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPRRARA 632
                     P    RT   +       P      P  T   P      R P  P R   
Sbjct: 480 TYLPPTNKPLPPVTVRTTVRTTPRPTLPPTKPPTRPPTTYLPPPTVRTTRPPPPPTRPPT 539

Query: 633 ---TRAVAAWAARSPTAASAPSRPAMRPRLTPP-RPP 731
              T  +     R+  A   P+RP  RP   PP RPP
Sbjct: 540 KPPTTYLPPVTVRTTRATPPPTRPPTRPPTPPPTRPP 576

 Score = 34.3 bits (77), Expect = 2.1
 Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 321 LTRSPPPANPRWSESTPPA--RALWRACRRSWTRAPT*SRPPVRPP----PPPPLR*SRP 482
           LT   P   P  ++  PP   R   R   R  T  PT  RPP +PP    PPP +R +RP
Sbjct: 788 LTTPAPTYLPPTNKPLPPVTVRTTVRTTPRP-TLPPT--RPPTKPPTTYLPPPTVRTTRP 844

Query: 483 PTAPWR 500
           P  P R
Sbjct: 845 PPPPTR 850

>ref|NP_507521.1| putative protein (5S487) [Caenorhabditis elegans]
           gi|11065667|emb|CAC14415.1| Hypothetical protein
           Y59A8B.19 [Caenorhabditis elegans]
          Length = 390

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 4/138 (2%)
 Frame = +3

Query: 330 SPPPANPRWSESTP-PARALWRACRRSWTRAPT*SRPPVRPPPPPPL---R*SRPPTAPW 497
           +PP A PR  +  P P  A  RA  R  T      R PV PP  PP    R  RPP AP 
Sbjct: 207 APPAAPPRMPDRPPRPPVAPPRALVRPPTVPVNPPRAPVAPPVAPPRMPDRPPRPPVAPS 266

Query: 498 RTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*RSPLAPRRARATRAVAAWAARSPTAA 677
           R          + PR     P      P    R   P+AP RA           R PT  
Sbjct: 267 RALVRPPTVPVNPPRAPVAPPVAPPRMPDRPPR--PPVAPPRA---------LVRPPTVP 315

Query: 678 SAPSRPAMRPRLTPPRPP 731
             P R  + P + PPRPP
Sbjct: 316 VNPPRAPVAPPVAPPRPP 333

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 36/103 (34%), Positives = 40/103 (37%), Gaps = 3/103 (2%)
 Frame = +3

Query: 432 RPPVRPPPPPPL---R*SRPPTAPWRTRACSGGCRASAPRCRAQAPA*TAPSPGWAAR*R 602
           RPPV PP  PP    R  RPP AP R          + PR     P   AP        R
Sbjct: 203 RPPVAPPAAPPRMPDRPPRPPVAPPRALVRPPTVPVNPPRAPVAPP--VAPPRMPDRPPR 260

Query: 603 SPLAPRRARATRAVAAWAARSPTAASAPSRPAMRPRLTPPRPP 731
            P+AP RA           R PT    P R  + P + PPR P
Sbjct: 261 PPVAPSRA---------LVRPPTVPVNPPRAPVAPPVAPPRMP 294

 Score = 32.3 bits (72), Expect = 8.2
 Identities = 28/79 (35%), Positives = 31/79 (38%), Gaps = 1/79 (1%)
 Frame = +3

Query: 330 SPPPANPRWSESTP-PARALWRACRRSWTRAPT*SRPPVRPPPPPPLR*SRPPTAPWRTR 506
           +PP A PR  +  P P  A  RA  R  T      R PV PP  PP    R PT P    
Sbjct: 285 APPVAPPRMPDRPPRPPVAPPRALVRPPTVPVNPPRAPVAPPVAPPRPPVRSPTVP---- 340

Query: 507 ACSGGCRASAPRCRAQAPA 563
                   +APR     PA
Sbjct: 341 VTPSTTPVTAPRLPVAPPA 359

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 53/159 (33%), Positives = 66/159 (41%), Gaps = 3/159 (1%)
 Frame = +3

Query: 264 RFPRSSRMAFRWS*LRRVLLTRSPPPANPRWSESTPPARAL--WRACRRSWTRAPT*SRP 437
           R PRS    F             PP      +  +PPARA   WR+  RS  R+P     
Sbjct: 93  RRPRSPPFCFPPPAAAPARRAHRPPRCRCAPAAPSPPARAFGPWRSSTRSSARSPQSPTA 152

Query: 438 PVRPPPPPPLR*SRPPTAPWRTRACSGG-CRASAPRCRAQAPA*TAPSPGWAAR*RSPLA 614
             R   P P R      +  R  A SG  CR +    R  APA  A SP  A+    P++
Sbjct: 153 GWRSFAPTPRRPCTAADSGTRRTAASGTRCRGTPSGTRCSAPAPCAASP--ASARSPPVS 210

Query: 615 PRRARATRAVAAWAARSPTAASAPSRPAMRPRLTPPRPP 731
           PR AR+       +  S  +ASAPSR +  PR    RPP
Sbjct: 211 PRTARSA------SRPSSRSASAPSRAS--PRTCSCRPP 241

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 45/121 (37%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
 Frame = -1

Query: 734 PRRARRRKPRPHSWAARS*SRCRTARRPRRHRPCSP-RPPRRQRTPSPCCPPR*RRGSCW 558
           PRR R    RP      S    RT  RP R RP +P R  R   +P P  P   RR  C+
Sbjct: 14  PRRPRSSTDRPTPPRTAS-GPSRTPARPPRTRPSAPGRIRRAAASPPPFPPAPARRRGCF 72

Query: 557 -----CLRSAARC*GSAAPAARSRSPWRCWWP--ASP*RRRRRRSHGWP*SGWCARPASP 399
                   + ARC  S+  A R RSP  C+ P  A+P RR  R     P    CA PA+P
Sbjct: 73  SGDFSASAAPARCCPSSCCARRPRSPPFCFPPPAAAPARRAHR-----PPRCRCA-PAAP 126

Query: 398 T 396
           +
Sbjct: 127 S 127



EST assemble image


clone accession position
1 LCL037d09_r AV628146 1 234
2 HC083e07_r AV638225 6 439
3 MX212b01_r BP089679 14 349
4 HC010d07_r AV632614 18 522
5 LCL088f10_r AV631094 407 749




Chlamydomonas reinhardtii
Kazusa DNA Research Institute