KCC001822A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001822A_C02 KCC001822A_c02
ttcgacggcgccacttgctaattgcggtcggcgaattcgcatagaagcaccagctgtctg
gccacgcaaatcagccaggaCTGGGGGAAATAGTTTCAAACCGCTGAGTTTCGGGCCACA
GCTGCAATACGAGGCGATTAGACAGCAGGAGGGCTTGCCGCCGACTCCCCTCTTGGCAGC
ACGGGTTTTGTTAAAGGCAGCACGGCGGGCACCTGAGCCACAGTCGCTTTGCTATGTAGC
GCACGCAGTGACAGAGCTCCTAGACTAGAACGACGTGTTGCATGTCGGTGCTCCCCTGGT
GCTGCCCCTTCCTTTAACCTGGCTGGTGTGCGCGTGCACTTGCAGGCGTTCCGTCCCAGT
CGCCGCTTCCAAGCGCCCTGCCCAAACAACTCCGGGGTTTAACCTTCCTGACCGCTCGTC
ACGCAAGAAGATGTCCGCCGCCGCTGAGGTGCTTGCTCGCAACCAGGAGCTGCTCACCGC
CATTGCGGCGGGTAACTATGAGAAGTATGCGACCATGTGCGACCCCTCCATGACCTGCTT
TGAGCCGGAGGCGGTGGGCCACCTGGTTGAGGGCCTGGATTTCCACAAATACTACTTCAC
CATGCCCTCCGCGCCGCCCGCACCCGACGCCCCCAAGCCGCACGTGCTCAACACCATGGC
CAGCCCGCACGTCCGCATGGTTGGCGACAGCTGCGCCGTCGTGTCGTACATCCGCCTCAC
GCAGAAGATGGTAAACGGCGCCCCGGTGACGGTGCAGGCCGAGGAGACCCGCGTGTGGGA
GAAGAAGGACGGCGGCTGGATCCATGTGCACATGCACCGCTCGCTGGTCAAGTAATTATG
TTAAAGGGCATGCGGAGAAATntgtgcgtngaagtgatgatatc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001822A_C02 KCC001822A_c02
         (884 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAA41481.1| calcium/calmodulin-dependent protein kinase II de...   130  3e-29
emb|CAA54414.1| calcium /calmodulin dependent protein kinase II ...   130  3e-29
emb|CAA54415.1| calcium /calmodulin dependent protein kinase II ...   130  3e-29
emb|CAA54413.1| calcium /calmodulin dependent protein kinase II ...   129  8e-29
ref|NP_036651.1| calcium/calmodulin-dependent protein kinase II,...   129  8e-29

>gb|AAA41481.1| calcium/calmodulin-dependent protein kinase II delta subunit
          Length = 206

 Score =  130 bits (327), Expect = 3e-29
 Identities = 66/161 (40%), Positives = 101/161 (61%), Gaps = 1/161 (0%)
 Frame = +2

Query: 344 RRSVPVAASKRPAQTTPGFNLPDRSSRKKMSAAAEVLARNQELLTAIAAGNYEKYATMCD 523
           + ++P  A +    +       D  +RK+     E++   ++L+ AI  G++E Y  +CD
Sbjct: 27  KENIPTPALESTESSNTTIEDEDVKARKQ-----EIIKVTEQLIEAINNGDFEAYTKICD 81

Query: 524 PSMTCFEPEAVGHLVEGLDFHKYYFTMPSAPPAPDAPKPHVLNTMASPHVRMVGDSCAVV 703
           P +T FEPEA+G+LVEG+DFH++YF   +A P  + P   +   + +PHV +VGD  A +
Sbjct: 82  PGLTAFEPEALGNLVEGMDFHRFYF--ENALPKINKP---IHTIILNPHVHLVGDDAACI 136

Query: 704 SYIRLTQKM-VNGAPVTVQAEETRVWEKKDGGWIHVHMHRS 823
           +YIRLTQ M  NG P T+Q+EETRVW ++DG W ++H HRS
Sbjct: 137 AYIRLTQYMDGNGMPKTMQSEETRVWHRRDGKWQNIHFHRS 177

>emb|CAA54414.1| calcium /calmodulin dependent protein kinase II subtype delta 5
           [Rattus norvegicus]
          Length = 213

 Score =  130 bits (327), Expect = 3e-29
 Identities = 66/161 (40%), Positives = 101/161 (61%), Gaps = 1/161 (0%)
 Frame = +2

Query: 344 RRSVPVAASKRPAQTTPGFNLPDRSSRKKMSAAAEVLARNQELLTAIAAGNYEKYATMCD 523
           + ++P  A +    +       D  +RK+     E++   ++L+ AI  G++E Y  +CD
Sbjct: 34  KENIPTPALESTESSNTTIEDEDVKARKQ-----EIIKVTEQLIEAINNGDFEAYTKICD 88

Query: 524 PSMTCFEPEAVGHLVEGLDFHKYYFTMPSAPPAPDAPKPHVLNTMASPHVRMVGDSCAVV 703
           P +T FEPEA+G+LVEG+DFH++YF   +A P  + P   +   + +PHV +VGD  A +
Sbjct: 89  PGLTAFEPEALGNLVEGMDFHRFYF--ENALPKINKP---IHTIILNPHVHLVGDDAACI 143

Query: 704 SYIRLTQKM-VNGAPVTVQAEETRVWEKKDGGWIHVHMHRS 823
           +YIRLTQ M  NG P T+Q+EETRVW ++DG W ++H HRS
Sbjct: 144 AYIRLTQYMDGNGMPKTMQSEETRVWHRRDGKWQNIHFHRS 184

>emb|CAA54415.1| calcium /calmodulin dependent protein kinase II subtype delta 6
           [Rattus norvegicus]
          Length = 192

 Score =  130 bits (327), Expect = 3e-29
 Identities = 66/161 (40%), Positives = 101/161 (61%), Gaps = 1/161 (0%)
 Frame = +2

Query: 344 RRSVPVAASKRPAQTTPGFNLPDRSSRKKMSAAAEVLARNQELLTAIAAGNYEKYATMCD 523
           + ++P  A +    +       D  +RK+     E++   ++L+ AI  G++E Y  +CD
Sbjct: 34  KENIPTPALESTESSNTTIEDEDVKARKQ-----EIIKVTEQLIEAINNGDFEAYTKICD 88

Query: 524 PSMTCFEPEAVGHLVEGLDFHKYYFTMPSAPPAPDAPKPHVLNTMASPHVRMVGDSCAVV 703
           P +T FEPEA+G+LVEG+DFH++YF   +A P  + P   +   + +PHV +VGD  A +
Sbjct: 89  PGLTAFEPEALGNLVEGMDFHRFYF--ENALPKINKP---IHTIILNPHVHLVGDDAACI 143

Query: 704 SYIRLTQKM-VNGAPVTVQAEETRVWEKKDGGWIHVHMHRS 823
           +YIRLTQ M  NG P T+Q+EETRVW ++DG W ++H HRS
Sbjct: 144 AYIRLTQYMDGNGMPKTMQSEETRVWHRRDGKWQNIHFHRS 184

>emb|CAA54413.1| calcium /calmodulin dependent protein kinase II subtype delta 4
           [Rattus norvegicus]
          Length = 206

 Score =  129 bits (323), Expect = 8e-29
 Identities = 61/127 (48%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
 Frame = +2

Query: 446 EVLARNQELLTAIAAGNYEKYATMCDPSMTCFEPEAVGHLVEGLDFHKYYFTMPSAPPAP 625
           E++   ++L+ AI  G++E Y  +CDP +T FEPEA+G+LVEG+DFH++YF   +A P  
Sbjct: 77  EIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGMDFHRFYF--ENALPKI 134

Query: 626 DAPKPHVLNTMASPHVRMVGDSCAVVSYIRLTQKM-VNGAPVTVQAEETRVWEKKDGGWI 802
           + P   +   + +PHV +VGD  A ++YIRLTQ M  NG P T+Q+EETRVW ++DG W 
Sbjct: 135 NKP---IHTIILNPHVHLVGDDAACIAYIRLTQYMDGNGMPKTMQSEETRVWHRRDGKWQ 191

Query: 803 HVHMHRS 823
           ++H HRS
Sbjct: 192 NIHFHRS 198

>ref|NP_036651.1| calcium/calmodulin-dependent protein kinase II, delta;
           Ca++/calmodulin-dependent protein kinase II, delta
           subunit; Ca++/calmodulin-dependent protein kinase 2
           delta subunit [Rattus norvegicus]
           gi|125288|sp|P15791|KCCD_RAT
           Calcium/calmodulin-dependent protein kinase type II
           delta chain (CaM-kinase II delta chain) (CaM kinase II
           delta subunit) (CaMK-II delta subunit)
           gi|111439|pir||A34366 Ca2+/calmodulin-dependent protein
           kinase (EC 2.7.1.123) II delta chain - rat
           gi|203267|gb|AAA40866.1| calmodulin-dependent protein
           kinase II-delta (EC 2.7.1.37)
          Length = 533

 Score =  129 bits (323), Expect = 8e-29
 Identities = 61/127 (48%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
 Frame = +2

Query: 446 EVLARNQELLTAIAAGNYEKYATMCDPSMTCFEPEAVGHLVEGLDFHKYYFTMPSAPPAP 625
           E++   ++L+ AI  G++E Y  +CDP +T FEPEA+G+LVEG+DFH++YF   +A P  
Sbjct: 383 EIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGMDFHRFYF--ENALPKI 440

Query: 626 DAPKPHVLNTMASPHVRMVGDSCAVVSYIRLTQKM-VNGAPVTVQAEETRVWEKKDGGWI 802
           + P   +   + +PHV +VGD  A ++YIRLTQ M  NG P T+Q+EETRVW ++DG W 
Sbjct: 441 NKP---IHTIILNPHVHLVGDDAACIAYIRLTQYMDGNGMPKTMQSEETRVWHRRDGKWQ 497

Query: 803 HVHMHRS 823
           ++H HRS
Sbjct: 498 NIHFHRS 504



EST assemble image


clone accession position
1 LC060f08_r AV623224 1 471
2 MXL078g11_r BP097635 307 674
3 HCL082b07_r AV644112 324 884




Chlamydomonas reinhardtii
Kazusa DNA Research Institute